Variant report

Variant	rs13330804
Chromosome Location	chr16:82022348-82022349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11866488	1.00[TSI][hapmap]
rs13335950	0.83[AFR][1000 genomes]
rs13336004	0.83[AFR][1000 genomes]
rs13337293	1.00[TSI][hapmap]
rs16956244	1.00[TSI][hapmap]
rs16956274	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16956406	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4395069	1.00[EUR][1000 genomes]
rs4423414	1.00[EUR][1000 genomes]
rs4435247	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4485363	1.00[EUR][1000 genomes]
rs4520828	1.00[EUR][1000 genomes]
rs4889446	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs57503200	1.00[EUR][1000 genomes]
rs61239952	1.00[EUR][1000 genomes]
rs61398036	1.00[EUR][1000 genomes]
rs61654022	1.00[EUR][1000 genomes]
rs6564990	1.00[CHD][hapmap]
rs7190253	1.00[EUR][1000 genomes]
rs7192075	1.00[EUR][1000 genomes]
rs7203384	1.00[EUR][1000 genomes]
rs72547419	1.00[EUR][1000 genomes]
rs73598737	1.00[EUR][1000 genomes]
rs74029313	1.00[EUR][1000 genomes]
rs8045494	1.00[TSI][hapmap]
rs8046533	1.00[TSI][hapmap]
rs8048090	1.00[TSI][hapmap]
rs8049750	1.00[TSI][hapmap]
rs8052451	1.00[EUR][1000 genomes]
rs8059606	1.00[EUR][1000 genomes]
rs8062348	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8063275	1.00[TSI][hapmap]
rs8191049	1.00[TSI][hapmap]
rs8191050	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8191167	1.00[TSI][hapmap]
rs9926028	1.00[TSI][hapmap]
rs9926211	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82021600-82029600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr16:82021800-82030000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr16:82022000-82030000	Weak transcription	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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