Variant report

Variant	rs4889446
Chromosome Location	chr16:81977185-81977186
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:81973095..81975241-chr16:81976233..81977759,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11866488	1.00[TSI][hapmap]
rs13330804	1.00[EUR][1000 genomes]
rs13337293	1.00[TSI][hapmap]
rs16956244	1.00[TSI][hapmap]
rs16956274	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16956406	1.00[TSI][hapmap]
rs4395069	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4423414	1.00[EUR][1000 genomes]
rs4435247	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4485363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4520828	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57503200	1.00[EUR][1000 genomes]
rs61398036	1.00[EUR][1000 genomes]
rs61654022	1.00[EUR][1000 genomes]
rs7190253	1.00[EUR][1000 genomes]
rs7192075	1.00[EUR][1000 genomes]
rs7203384	1.00[EUR][1000 genomes]
rs73598737	1.00[EUR][1000 genomes]
rs74029313	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8045494	1.00[TSI][hapmap]
rs8046533	1.00[TSI][hapmap]
rs8048090	1.00[TSI][hapmap]
rs8049750	1.00[TSI][hapmap]
rs8052451	1.00[EUR][1000 genomes]
rs8059606	1.00[EUR][1000 genomes]
rs8062348	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8063275	1.00[TSI][hapmap]
rs8191049	1.00[TSI][hapmap]
rs8191050	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8191167	1.00[TSI][hapmap]
rs9926028	1.00[TSI][hapmap]
rs9926211	1.00[TSI][hapmap]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81920400-81982000	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr16:81925800-81992600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr16:81933000-81983600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr16:81936000-81982000	Weak transcription	Gastric	stomach
5	chr16:81936000-81984600	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr16:81945000-81984600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr16:81946200-81985200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr16:81950600-81982000	Strong transcription	GM12878-XiMat	blood
9	chr16:81952000-81982800	Strong transcription	Primary B cells from peripheral blood	blood
10	chr16:81952400-81983000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr16:81952600-81981800	Strong transcription	Primary B cells from cord blood	blood
12	chr16:81952800-81984600	Strong transcription	Liver	Liver
13	chr16:81953000-81977400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr16:81954800-81991800	Weak transcription	Fetal Thymus	thymus
15	chr16:81959600-81983800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr16:81960600-81982400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr16:81961600-81984600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr16:81962600-81995800	Weak transcription	Small Intestine	intestine
19	chr16:81962800-81983600	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr16:81963000-81982000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr16:81963000-81984600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr16:81963600-81979600	Weak transcription	Colonic Mucosa	Colon
23	chr16:81963600-81983200	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr16:81967400-81984600	Weak transcription	Placenta	Placenta
25	chr16:81968200-81984200	Strong transcription	Primary hematopoietic stem cells	blood
26	chr16:81970200-81990800	Weak transcription	Pancreas	Pancrea
27	chr16:81970800-81979800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr16:81970800-81991200	Weak transcription	Thymus	Thymus
29	chr16:81970800-81994600	Weak transcription	Fetal Intestine Large	intestine
30	chr16:81971200-81977400	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr16:81971600-81984600	Weak transcription	Left Ventricle	heart
32	chr16:81972200-81993200	Weak transcription	Fetal Kidney	kidney
33	chr16:81972400-81977600	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr16:81973200-81984600	Weak transcription	Fetal Intestine Small	intestine
35	chr16:81973400-81977200	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr16:81973400-81979600	Weak transcription	Lung	lung
37	chr16:81973600-81980800	Weak transcription	Fetal Stomach	stomach
38	chr16:81974600-81977200	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr16:81974800-81977400	Enhancers	H1 Cell Line	embryonic stem cell
40	chr16:81974800-81977600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr16:81975000-81978800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr16:81975000-81979000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr16:81975200-81978800	Weak transcription	NHLF	lung
44	chr16:81975200-81979000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr16:81975400-81977400	Weak transcription	HSMM	muscle
46	chr16:81975400-81978800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr16:81975400-81979200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr16:81975600-81977200	Enhancers	H9 Cell Line	embryonic stem cell
49	chr16:81975600-81983200	Strong transcription	Duodenum Mucosa	Duodenum
50	chr16:81975600-81984800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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