Variant report

Variant	rs8052451
Chromosome Location	chr16:82070283-82070284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82069797..82071329-chr16:82092897..82095086,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13330804	1.00[EUR][1000 genomes]
rs16956274	1.00[EUR][1000 genomes]
rs16956406	1.00[EUR][1000 genomes]
rs4395069	1.00[EUR][1000 genomes]
rs4485363	1.00[EUR][1000 genomes]
rs4520828	1.00[EUR][1000 genomes]
rs4889446	1.00[EUR][1000 genomes]
rs61239952	1.00[EUR][1000 genomes]
rs61398036	1.00[EUR][1000 genomes]
rs61654022	1.00[EUR][1000 genomes]
rs7190253	1.00[EUR][1000 genomes]
rs7192075	1.00[EUR][1000 genomes]
rs7203384	1.00[EUR][1000 genomes]
rs72547419	1.00[EUR][1000 genomes]
rs73598737	1.00[EUR][1000 genomes]
rs74029313	1.00[EUR][1000 genomes]
rs8059606	1.00[EUR][1000 genomes]
rs8191050	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82067400-82077000	Weak transcription	Right Atrium	heart
2	chr16:82068000-82072800	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr16:82068200-82071600	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr16:82068600-82070800	Active TSS	Rectal Mucosa Donor 31	rectum
5	chr16:82068600-82071600	Active TSS	Fetal Intestine Large	intestine
6	chr16:82068600-82071600	Active TSS	Fetal Intestine Small	intestine
7	chr16:82068600-82071800	Active TSS	Liver	Liver
8	chr16:82068600-82072000	Active TSS	Duodenum Mucosa	Duodenum
9	chr16:82068600-82072600	Active TSS	Placenta	Placenta
10	chr16:82068800-82070400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr16:82068800-82070800	Active TSS	Pancreas	Pancrea
12	chr16:82068800-82070800	Active TSS	Rectal Smooth Muscle	rectum
13	chr16:82068800-82077400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr16:82069000-82070800	Active TSS	Muscle Satellite Cultured Cells	--
15	chr16:82069200-82070400	Active TSS	NHLF	lung
16	chr16:82069200-82070600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr16:82069200-82070800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr16:82069200-82070800	Active TSS	Fetal Stomach	stomach
19	chr16:82069200-82074000	Weak transcription	Fetal Lung	lung
20	chr16:82069200-82076600	Weak transcription	HSMMtube	muscle
21	chr16:82069200-82077400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr16:82069400-82070400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr16:82069400-82075200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr16:82069800-82070600	Weak transcription	Fetal Kidney	kidney
25	chr16:82069800-82071200	Weak transcription	HUVEC	blood vessel
26	chr16:82070000-82070400	Active TSS	HepG2	liver
27	chr16:82070000-82071400	Weak transcription	Stomach Mucosa	stomach
28	chr16:82070000-82072000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr16:82070000-82072000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr16:82070000-82072200	Weak transcription	Gastric	stomach
31	chr16:82070200-82083400	Weak transcription	Colonic Mucosa	Colon

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