Variant report

Variant	rs16956406
Chromosome Location	chr16:82129196-82129197
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82123378..82125016-chr16:82127857..82130334,2	K562	blood:
2	chr16:82127698..82130155-chr16:82130878..82132469,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs13330804	1.00[EUR][1000 genomes]
rs13337293	1.00[TSI][hapmap]
rs16956244	1.00[TSI][hapmap]
rs16956274	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4453484	1.00[AMR][1000 genomes]
rs4889446	1.00[TSI][hapmap]
rs57362890	1.00[AMR][1000 genomes]
rs61239952	1.00[EUR][1000 genomes]
rs61654022	1.00[EUR][1000 genomes]
rs7190253	1.00[EUR][1000 genomes]
rs7192075	1.00[EUR][1000 genomes]
rs7203384	1.00[EUR][1000 genomes]
rs72547419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8045494	1.00[TSI][hapmap]
rs8046533	1.00[TSI][hapmap]
rs8048090	1.00[TSI][hapmap]
rs8049750	1.00[TSI][hapmap]
rs8052451	1.00[EUR][1000 genomes]
rs8063275	1.00[TSI][hapmap]
rs8191049	1.00[TSI][hapmap]
rs8191050	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8191119	1.00[AMR][1000 genomes]
rs8191129	1.00[AMR][1000 genomes]
rs8191147	1.00[AMR][1000 genomes]
rs8191157	1.00[AMR][1000 genomes]
rs8191167	1.00[TSI][hapmap]
rs8191180	1.00[AMR][1000 genomes]
rs8191204	1.00[AMR][1000 genomes]
rs8191212	1.00[AMR][1000 genomes]
rs9926028	1.00[TSI][hapmap]
rs9926211	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
3	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv1061709	chr16:82093183-82159867	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82118000-82135800	Weak transcription	Pancreas	Pancrea
2	chr16:82118600-82134800	Weak transcription	Colonic Mucosa	Colon
3	chr16:82119200-82135800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr16:82122200-82134400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr16:82123400-82129200	Strong transcription	Placenta	Placenta
6	chr16:82123400-82129200	Strong transcription	HepG2	liver
7	chr16:82124000-82132600	Strong transcription	Liver	Liver
8	chr16:82126000-82141400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr16:82126400-82131600	Weak transcription	Fetal Intestine Large	intestine
10	chr16:82126400-82131600	Weak transcription	Fetal Stomach	stomach
11	chr16:82126600-82131600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr16:82126600-82131600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr16:82126600-82131800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr16:82127800-82129200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr16:82128000-82129200	Enhancers	H9 Cell Line	embryonic stem cell
16	chr16:82128000-82129600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr16:82128000-82132000	Strong transcription	Fetal Intestine Small	intestine
18	chr16:82128200-82130000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr16:82128400-82129400	Enhancers	H1 Cell Line	embryonic stem cell
20	chr16:82128600-82129400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
21	chr16:82128800-82129200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr16:82128800-82129200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr16:82129000-82129200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
24	chr16:82129000-82129200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr16:82129000-82129200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
26	chr16:82129000-82129200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr16:82129000-82129400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
28	chr16:82129000-82129400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
29	chr16:82129000-82129400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
30	chr16:82129000-82131600	Weak transcription	Duodenum Mucosa	Duodenum

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