Variant report
| Variant | rs8063275 |
|---|---|
| Chromosome Location | chr16:82048234-82048235 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs13334514 | 0.82[AMR][1000 genomes] |
| rs13337293 | 1.00[GIH][hapmap];1.00[TSI][hapmap] |
| rs16956174 | 0.86[MEX][hapmap];0.82[AMR][1000 genomes] |
| rs16956244 | 1.00[GIH][hapmap];1.00[TSI][hapmap] |
| rs16956274 | 1.00[GIH][hapmap];1.00[TSI][hapmap] |
| rs16956406 | 1.00[TSI][hapmap] |
| rs41530451 | 1.00[MEX][hapmap];0.82[AMR][1000 genomes] |
| rs4399528 | 1.00[EUR][1000 genomes] |
| rs4435247 | 1.00[TSI][hapmap] |
| rs4889446 | 1.00[TSI][hapmap] |
| rs61644377 | 0.83[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs6564960 | 0.82[AMR][1000 genomes] |
| rs7193161 | 0.82[AMR][1000 genomes] |
| rs7201738 | 0.82[AMR][1000 genomes] |
| rs73600733 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74029358 | 0.84[AMR][1000 genomes] |
| rs8045494 | 1.00[GIH][hapmap];1.00[TSI][hapmap] |
| rs8046533 | 1.00[GIH][hapmap];1.00[TSI][hapmap] |
| rs8048090 | 1.00[GIH][hapmap];1.00[TSI][hapmap] |
| rs8048713 | 0.82[AMR][1000 genomes] |
| rs8049750 | 1.00[GIH][hapmap];1.00[TSI][hapmap] |
| rs8049910 | 0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs8062348 | 1.00[TSI][hapmap] |
| rs8064052 | 0.84[AMR][1000 genomes] |
| rs8191048 | 1.00[GIH][hapmap] |
| rs8191049 | 1.00[GIH][hapmap];1.00[TSI][hapmap] |
| rs8191050 | 1.00[GIH][hapmap];1.00[TSI][hapmap] |
| rs8191167 | 1.00[GIH][hapmap];1.00[TSI][hapmap] |
| rs9926028 | 1.00[GIH][hapmap];1.00[TSI][hapmap] |
| rs9926211 | 1.00[GIH][hapmap];1.00[TSI][hapmap] |
| rs9926634 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv907012 | chr16:81986896-82115148 | ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv1058368 | chr16:82029516-82152788 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv532598 | chr16:82034475-82738733 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 28 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:82045400-82049600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr16:82045600-82049400 | Weak transcription | Stomach Mucosa | stomach |
| 3 | chr16:82045800-82048400 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
