Variant report

Variant	rs8064052
Chromosome Location	chr16:82055955-82055956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82051682..82053515-chr16:82055462..82057301,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11865006	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13333646	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13333826	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13334514	0.86[AMR][1000 genomes]
rs16956130	1.00[CHB][hapmap]
rs16956174	1.00[CHB][hapmap];0.86[AMR][1000 genomes]
rs16956191	1.00[CHB][hapmap]
rs16956202	1.00[CHB][hapmap]
rs16956236	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16956242	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16956248	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28448330	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28448747	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28558197	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28634487	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2955159	1.00[JPT][hapmap]
rs3111351	1.00[JPT][hapmap]
rs34132140	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36043523	1.00[CHB][hapmap]
rs41530451	1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4262939	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4536470	1.00[CHB][hapmap]
rs4541072	0.83[ASN][1000 genomes]
rs4628962	1.00[JPT][hapmap]
rs4636900	1.00[CHB][hapmap]
rs58097356	0.83[ASN][1000 genomes]
rs59151852	0.88[ASN][1000 genomes]
rs60200374	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6564956	1.00[CHB][hapmap]
rs6564957	0.83[ASN][1000 genomes]
rs6564960	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7188332	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7190839	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7193161	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7194226	1.00[CHB][hapmap]
rs7195977	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7196087	1.00[JPT][hapmap]
rs7198264	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7200696	1.00[JPT][hapmap]
rs7200711	1.00[JPT][hapmap]
rs7201738	0.86[AMR][1000 genomes]
rs7202378	1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[ASN][1000 genomes]
rs73600733	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73600740	0.83[ASN][1000 genomes]
rs74029358	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs8046220	1.00[EUR][1000 genomes]
rs8046900	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8048305	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8048713	0.86[AMR][1000 genomes]
rs8049910	1.00[CHB][hapmap]
rs8053337	0.83[ASN][1000 genomes]
rs8191112	1.00[JPT][hapmap]
rs8191135	1.00[JPT][hapmap]
rs8191155	1.00[JPT][hapmap]
rs8191158	1.00[JPT][hapmap]
rs8191159	1.00[JPT][hapmap]
rs8191198	1.00[JPT][hapmap]
rs9921872	1.00[CHB][hapmap]
rs9933207	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82055200-82059400	Weak transcription	Small Intestine	intestine
2	chr16:82055400-82056200	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links