Variant report

Variant	rs4536470
Chromosome Location	chr16:82049610-82049611
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr16:82049600-82049750	NHEK	skin:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr16:82043593..82046286-chr16:82047903..82050151,2	MCF-7	breast:
2	chr16:82049516..82052085-chr16:82055995..82058256,2	K562	blood:
3	chr16:82049544..82050394-chr16:82263299..82263885,2	MCF-7	breast:

Variant related genes	Relation type
SDR42E1	TF binding region
ENSG00000184860	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs11865006	1.00[CHB][hapmap]
rs13333826	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap]
rs13334514	1.00[ASN][1000 genomes]
rs16956130	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16956155	0.94[ASN][1000 genomes]
rs16956161	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16956174	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16956191	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16956202	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16956242	1.00[CHB][hapmap]
rs16956248	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap]
rs2317419	1.00[EUR][1000 genomes]
rs28448747	0.89[ASN][1000 genomes]
rs2955159	0.86[GIH][hapmap];1.00[TSI][hapmap]
rs36043523	1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs41530451	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4316745	1.00[ASN][1000 genomes]
rs4354930	1.00[ASN][1000 genomes]
rs4476172	1.00[ASN][1000 genomes]
rs4541072	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4580158	1.00[ASN][1000 genomes]
rs4591137	1.00[ASN][1000 genomes]
rs4636900	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs58097356	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59961458	0.94[ASN][1000 genomes]
rs59976110	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61230229	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs61537150	1.00[EUR][1000 genomes]
rs61644377	1.00[ASN][1000 genomes]
rs6564956	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6564957	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7186963	1.00[EUR][1000 genomes]
rs7187298	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7188332	1.00[CHB][hapmap]
rs7193258	0.94[ASN][1000 genomes]
rs7194226	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7196087	0.93[GIH][hapmap];1.00[TSI][hapmap]
rs7201738	1.00[ASN][1000 genomes]
rs7202626	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7205983	0.87[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7206672	1.00[ASN][1000 genomes]
rs73598796	1.00[ASN][1000 genomes]
rs73600709	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73600733	1.00[ASN][1000 genomes]
rs73600740	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73603064	1.00[EUR][1000 genomes]
rs73603078	1.00[EUR][1000 genomes]
rs74029374	1.00[EUR][1000 genomes]
rs8046900	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap]
rs8048713	0.94[ASN][1000 genomes]
rs8049910	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8053337	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8054497	1.00[ASN][1000 genomes]
rs8057181	0.87[ASN][1000 genomes]
rs8063026	0.94[ASN][1000 genomes]
rs8191135	1.00[EUR][1000 genomes]
rs8191155	1.00[EUR][1000 genomes]
rs8191158	1.00[EUR][1000 genomes]
rs8191159	0.86[GIH][hapmap]
rs8191198	1.00[EUR][1000 genomes]
rs8191207	1.00[EUR][1000 genomes]
rs8191211	1.00[EUR][1000 genomes]
rs8191220	1.00[EUR][1000 genomes]
rs9921872	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9933207	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9933660	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82048800-82049800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr16:82049600-82049800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr16:82049600-82049800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr16:82049600-82049800	Flanking Active TSS	Duodenum Mucosa	Duodenum
5	chr16:82049600-82049800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr16:82049600-82049800	Enhancers	HUVEC	blood vessel
7	chr16:82049600-82049800	Enhancers	NHEK	skin
8	chr16:82049600-82050000	Enhancers	Fetal Intestine Small	intestine
9	chr16:82049600-82050000	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr16:82049600-82050200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr16:82049600-82050200	Enhancers	Liver	Liver
12	chr16:82049600-82050200	Bivalent/Poised TSS	A549	lung
13	chr16:82049600-82050400	Flanking Active TSS	Stomach Mucosa	stomach
14	chr16:82049600-82050600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr16:82049600-82051800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr16:82049600-82051800	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links