Variant report

Variant	rs4580158
Chromosome Location	chr16:82008019-82008020
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82007378..82010326-chr16:82014613..82016453,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11150429	0.88[AMR][1000 genomes]
rs12445242	0.85[EUR][1000 genomes]
rs12716930	0.96[EUR][1000 genomes]
rs12716934	0.93[EUR][1000 genomes]
rs13332763	0.96[EUR][1000 genomes]
rs13334514	1.00[ASN][1000 genomes]
rs13339279	0.96[EUR][1000 genomes]
rs16956130	0.94[ASN][1000 genomes]
rs16956155	0.94[ASN][1000 genomes]
rs16956161	1.00[ASN][1000 genomes]
rs16956174	0.94[ASN][1000 genomes]
rs16956191	0.94[ASN][1000 genomes]
rs16956202	1.00[ASN][1000 genomes]
rs28448747	0.89[ASN][1000 genomes]
rs34431536	0.91[EUR][1000 genomes]
rs36043523	1.00[ASN][1000 genomes]
rs41530451	1.00[ASN][1000 genomes]
rs4316745	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4354930	1.00[ASN][1000 genomes]
rs4441264	0.96[EUR][1000 genomes]
rs4476172	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4514671	0.89[EUR][1000 genomes]
rs4536470	1.00[ASN][1000 genomes]
rs4541072	0.89[ASN][1000 genomes]
rs4544234	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4580157	0.96[EUR][1000 genomes]
rs4591137	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4636900	0.89[ASN][1000 genomes]
rs58097356	0.89[ASN][1000 genomes]
rs59961458	0.94[ASN][1000 genomes]
rs59976110	1.00[ASN][1000 genomes]
rs61644377	1.00[ASN][1000 genomes]
rs6564945	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6564956	1.00[ASN][1000 genomes]
rs6564957	0.89[ASN][1000 genomes]
rs7187298	1.00[ASN][1000 genomes]
rs7188395	0.96[EUR][1000 genomes]
rs7193258	0.94[ASN][1000 genomes]
rs7194226	1.00[ASN][1000 genomes]
rs7201738	1.00[ASN][1000 genomes]
rs7202626	1.00[ASN][1000 genomes]
rs7205983	0.89[ASN][1000 genomes]
rs7206672	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598796	1.00[ASN][1000 genomes]
rs73600709	1.00[ASN][1000 genomes]
rs73600733	1.00[ASN][1000 genomes]
rs73600740	0.89[ASN][1000 genomes]
rs7499092	0.96[EUR][1000 genomes]
rs8048713	0.94[ASN][1000 genomes]
rs8049910	1.00[ASN][1000 genomes]
rs8053337	0.89[ASN][1000 genomes]
rs8054497	1.00[ASN][1000 genomes]
rs8057181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8063026	0.94[ASN][1000 genomes]
rs9921872	1.00[ASN][1000 genomes]
rs9933207	0.94[ASN][1000 genomes]
rs9933660	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82006800-82009200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr16:82007000-82009000	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr16:82007200-82008400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr16:82007400-82008200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr16:82007400-82008400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr16:82007600-82009000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr16:82007600-82012000	Weak transcription	Pancreas	Pancrea
8	chr16:82007800-82008200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr16:82008000-82008400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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