Variant report

Variant	rs12716930
Chromosome Location	chr16:82007607-82007608
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12445242	0.89[EUR][1000 genomes]
rs12716934	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13332763	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13339279	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34431536	0.94[EUR][1000 genomes]
rs4316745	0.96[EUR][1000 genomes]
rs4441264	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4514671	0.92[EUR][1000 genomes]
rs4544234	1.00[EUR][1000 genomes]
rs4580157	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4580158	0.96[EUR][1000 genomes]
rs4591137	0.96[EUR][1000 genomes]
rs6564945	1.00[EUR][1000 genomes]
rs7188395	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7206672	0.95[EUR][1000 genomes]
rs7499092	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8057181	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82006800-82009200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr16:82007000-82007800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr16:82007000-82008000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr16:82007000-82009000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr16:82007200-82008400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr16:82007400-82008200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr16:82007400-82008400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr16:82007600-82007800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr16:82007600-82009000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr16:82007600-82012000	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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