Variant report

Variant	rs6564945
Chromosome Location	chr16:82005188-82005189
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12445242	0.89[EUR][1000 genomes]
rs12716930	1.00[EUR][1000 genomes]
rs12716934	0.96[EUR][1000 genomes]
rs13332763	1.00[EUR][1000 genomes]
rs13339279	1.00[EUR][1000 genomes]
rs16956174	0.81[YRI][hapmap]
rs16956191	0.80[YRI][hapmap]
rs34431536	0.94[EUR][1000 genomes]
rs4316745	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4441264	1.00[EUR][1000 genomes]
rs4514671	0.92[EUR][1000 genomes]
rs4544234	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4580157	1.00[EUR][1000 genomes]
rs4580158	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4591137	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7188395	1.00[EUR][1000 genomes]
rs7206672	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7499092	1.00[EUR][1000 genomes]
rs8057181	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81982600-82007000	Weak transcription	Gastric	stomach
2	chr16:82004800-82007200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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