Variant report

Variant	rs16956191
Chromosome Location	chr16:82037873-82037874
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82029747..82031502-chr16:82036803..82039114,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11865006	1.00[CHB][hapmap]
rs13333826	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs13334514	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs16956130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16956155	1.00[ASN][1000 genomes]
rs16956161	0.94[ASN][1000 genomes]
rs16956174	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16956202	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16956242	1.00[CHB][hapmap]
rs16956248	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs28448747	0.83[ASN][1000 genomes]
rs36043523	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs41530451	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4316745	0.94[ASN][1000 genomes]
rs4354930	0.94[ASN][1000 genomes]
rs4476172	0.94[ASN][1000 genomes]
rs4536470	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4541072	0.83[ASN][1000 genomes]
rs4580158	0.94[ASN][1000 genomes]
rs4591137	0.94[ASN][1000 genomes]
rs4636900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58097356	0.83[ASN][1000 genomes]
rs59961458	1.00[ASN][1000 genomes]
rs59976110	0.94[ASN][1000 genomes]
rs61644377	0.94[ASN][1000 genomes]
rs6564956	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6564957	0.83[ASN][1000 genomes]
rs6564960	0.82[AFR][1000 genomes]
rs7187298	0.94[ASN][1000 genomes]
rs7188332	1.00[CHB][hapmap]
rs7193258	0.88[ASN][1000 genomes]
rs7194226	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7201738	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7202626	0.94[ASN][1000 genomes]
rs7205983	1.00[CEU][hapmap];0.87[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7206672	0.94[ASN][1000 genomes]
rs73598796	0.94[ASN][1000 genomes]
rs73600709	0.94[ASN][1000 genomes]
rs73600733	0.94[ASN][1000 genomes]
rs73600740	0.83[ASN][1000 genomes]
rs8046900	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs8048713	1.00[ASN][1000 genomes]
rs8049910	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8053337	0.83[ASN][1000 genomes]
rs8054497	0.94[ASN][1000 genomes]
rs8057181	0.82[ASN][1000 genomes]
rs8063026	1.00[ASN][1000 genomes]
rs9921872	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9933207	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9933660	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82027400-82044200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr16:82027800-82041600	Strong transcription	Primary T cells from cord blood	blood
3	chr16:82029400-82041400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr16:82030000-82044000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr16:82030600-82044200	Weak transcription	Small Intestine	intestine
6	chr16:82030800-82042400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr16:82031000-82044400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr16:82031200-82038600	Strong transcription	Duodenum Mucosa	Duodenum
9	chr16:82032000-82038000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr16:82032000-82038400	Strong transcription	Fetal Intestine Large	intestine
11	chr16:82032000-82043400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr16:82032000-82044400	Weak transcription	Colon Smooth Muscle	Colon
13	chr16:82032000-82044400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr16:82032200-82039200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr16:82032200-82039400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr16:82032200-82042400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr16:82032200-82042600	Weak transcription	A549	lung
18	chr16:82032400-82044400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr16:82033000-82042400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr16:82033600-82038400	Weak transcription	Lung	lung
21	chr16:82033600-82040800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr16:82033800-82041000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr16:82033800-82042400	Weak transcription	Spleen	Spleen
24	chr16:82033800-82042600	Weak transcription	Colonic Mucosa	Colon
25	chr16:82033800-82044200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr16:82034000-82041200	Weak transcription	Primary B cells from peripheral blood	blood
27	chr16:82034000-82042400	Weak transcription	Fetal Stomach	stomach
28	chr16:82034000-82042400	Weak transcription	Fetal Thymus	thymus
29	chr16:82034000-82042400	Weak transcription	Thymus	Thymus
30	chr16:82034000-82044200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr16:82034000-82044400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr16:82034200-82042400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr16:82034200-82042600	Weak transcription	Gastric	stomach
34	chr16:82034200-82043800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr16:82034400-82040400	Weak transcription	HMEC	breast
36	chr16:82034600-82042600	Weak transcription	Liver	Liver
37	chr16:82034800-82042400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr16:82034800-82044200	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr16:82034800-82044200	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr16:82035000-82042600	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr16:82035200-82039200	Strong transcription	NHEK	skin
42	chr16:82035600-82039400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr16:82036000-82042600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr16:82037000-82038000	Weak transcription	Fetal Kidney	kidney
45	chr16:82037800-82038000	Genic enhancers	Pancreas	Pancrea
46	chr16:82037800-82038200	Strong transcription	Esophagus	oesophagus
47	chr16:82037800-82038200	Strong transcription	Fetal Intestine Small	intestine
48	chr16:82037800-82038200	Enhancers	Right Ventricle	heart
49	chr16:82037800-82038600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr16:82037800-82038600	Enhancers	Left Ventricle	heart

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