Variant report

Variant	rs9933207
Chromosome Location	chr16:82031277-82031278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:82030963..82032834-chr16:82203698..82205625,2	MCF-7	breast:
2	chr16:81972632..81975511-chr16:82029375..82034440,5	MCF-7	breast:
3	chr16:82030016..82033170-chr16:82033184..82035673,3	K562	blood:
4	chr16:81973286..81973820-chr16:82030870..82031651,2	MCF-7	breast:
5	chr16:82030016..82033170-chr16:82033184..82036470,3	K562	blood:
6	chr16:81974029..81975094-chr16:82030141..82031465,7	MCF-7	breast:
7	chr16:82031112..82032708-chr16:82039797..82042760,2	MCF-7	breast:
8	chr16:82029747..82031502-chr16:82036803..82039114,2	MCF-7	breast:
9	chr16:81973991..81975248-chr16:82030401..82031511,13	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000261029	Chromatin interaction
ENSG00000135698	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11865006	1.00[CHB][hapmap]
rs13333826	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap]
rs13334514	0.94[ASN][1000 genomes]
rs16956130	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16956155	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16956161	0.94[ASN][1000 genomes]
rs16956174	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16956191	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16956202	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16956242	1.00[CHB][hapmap]
rs16956248	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs28448747	0.83[ASN][1000 genomes]
rs36043523	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs41530451	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4316745	0.94[ASN][1000 genomes]
rs4354930	0.94[ASN][1000 genomes]
rs4476172	0.94[ASN][1000 genomes]
rs4536470	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4541072	0.83[ASN][1000 genomes]
rs4580158	0.94[ASN][1000 genomes]
rs4591137	0.94[ASN][1000 genomes]
rs4636900	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs58097356	0.83[ASN][1000 genomes]
rs59961458	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59976110	0.94[ASN][1000 genomes]
rs61644377	0.94[ASN][1000 genomes]
rs6564956	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6564957	0.83[ASN][1000 genomes]
rs7187298	0.94[ASN][1000 genomes]
rs7188332	1.00[CHB][hapmap]
rs7193258	0.88[ASN][1000 genomes]
rs7194226	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7195977	0.81[EUR][1000 genomes]
rs7201738	0.94[ASN][1000 genomes]
rs7202626	0.94[ASN][1000 genomes]
rs7205983	0.87[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7206672	0.94[ASN][1000 genomes]
rs73598796	0.94[ASN][1000 genomes]
rs73600709	0.94[ASN][1000 genomes]
rs73600733	0.94[ASN][1000 genomes]
rs73600740	0.83[ASN][1000 genomes]
rs8046900	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.82[MEX][hapmap]
rs8048713	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8049910	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8053337	0.83[ASN][1000 genomes]
rs8054497	0.94[ASN][1000 genomes]
rs8057181	0.82[ASN][1000 genomes]
rs8063026	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8191159	0.82[GIH][hapmap]
rs9921872	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9933660	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82023000-82031800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr16:82023600-82036600	Weak transcription	Fetal Kidney	kidney
3	chr16:82024800-82032800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr16:82027400-82031400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr16:82027400-82044200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr16:82027600-82033200	Weak transcription	Primary B cells from cord blood	blood
7	chr16:82027800-82041600	Strong transcription	Primary T cells from cord blood	blood
8	chr16:82028200-82031800	Enhancers	Placenta	Placenta
9	chr16:82028400-82031600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr16:82028600-82032000	Enhancers	Colon Smooth Muscle	Colon
11	chr16:82028800-82031400	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr16:82028800-82031800	Enhancers	Stomach Smooth Muscle	stomach
13	chr16:82029000-82031600	Weak transcription	Gastric	stomach
14	chr16:82029000-82031800	Enhancers	Fetal Stomach	stomach
15	chr16:82029200-82031400	Weak transcription	Fetal Thymus	thymus
16	chr16:82029200-82032200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr16:82029400-82041400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr16:82029600-82031400	Flanking Active TSS	HUVEC	blood vessel
19	chr16:82029800-82031600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr16:82030000-82032400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr16:82030000-82034000	Strong transcription	Thymus	Thymus
22	chr16:82030000-82034800	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr16:82030000-82035000	Weak transcription	GM12878-XiMat	blood
24	chr16:82030000-82044000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr16:82030200-82031600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr16:82030200-82031600	Enhancers	HMEC	breast
27	chr16:82030200-82031800	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr16:82030200-82031800	Enhancers	NHLF	lung
29	chr16:82030200-82031800	Enhancers	Osteobl	bone
30	chr16:82030200-82032000	Enhancers	Placenta Amnion	Placenta Amnion
31	chr16:82030200-82032200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr16:82030200-82032200	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr16:82030200-82034200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr16:82030200-82034800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr16:82030200-82034800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr16:82030400-82031400	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr16:82030400-82031400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr16:82030400-82031400	Weak transcription	Liver	Liver
39	chr16:82030400-82031800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr16:82030400-82031800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr16:82030400-82031800	Enhancers	HepG2	liver
42	chr16:82030400-82032000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr16:82030400-82032000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr16:82030400-82032000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr16:82030400-82032200	Enhancers	Rectal Smooth Muscle	rectum
46	chr16:82030400-82032400	Enhancers	NHDF-Ad	bronchial
47	chr16:82030400-82033200	Weak transcription	Colonic Mucosa	Colon
48	chr16:82030600-82031600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr16:82030600-82031800	Enhancers	Muscle Satellite Cultured Cells	--
50	chr16:82030600-82031800	Flanking Active TSS	A549	lung

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