Variant report

Variant	rs4541072
Chromosome Location	chr16:82046575-82046576
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs11865006	0.83[ASN][1000 genomes]
rs13333646	0.83[ASN][1000 genomes]
rs13333826	0.83[ASN][1000 genomes]
rs13334514	0.89[ASN][1000 genomes]
rs16956130	0.83[ASN][1000 genomes]
rs16956155	0.83[ASN][1000 genomes]
rs16956161	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16956174	0.83[ASN][1000 genomes]
rs16956191	0.83[ASN][1000 genomes]
rs16956202	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16956236	0.83[ASN][1000 genomes]
rs16956242	0.83[ASN][1000 genomes]
rs16956248	0.83[ASN][1000 genomes]
rs2317419	1.00[EUR][1000 genomes]
rs28448330	0.83[ASN][1000 genomes]
rs28448747	1.00[ASN][1000 genomes]
rs28634487	0.89[ASN][1000 genomes]
rs34132140	0.83[ASN][1000 genomes]
rs36043523	0.89[ASN][1000 genomes]
rs41530451	0.89[ASN][1000 genomes]
rs4262939	0.83[ASN][1000 genomes]
rs4316745	0.89[ASN][1000 genomes]
rs4354930	0.89[ASN][1000 genomes]
rs4476172	0.89[ASN][1000 genomes]
rs4536470	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4580158	0.89[ASN][1000 genomes]
rs4591137	0.89[ASN][1000 genomes]
rs58097356	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59151852	0.83[ASN][1000 genomes]
rs59961458	0.83[ASN][1000 genomes]
rs59976110	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60200374	0.83[ASN][1000 genomes]
rs61537150	1.00[EUR][1000 genomes]
rs61644377	0.89[ASN][1000 genomes]
rs6564956	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6564957	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6564960	0.89[ASN][1000 genomes]
rs7186963	1.00[EUR][1000 genomes]
rs7187298	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7188332	0.83[ASN][1000 genomes]
rs7193161	0.89[ASN][1000 genomes]
rs7193258	0.83[ASN][1000 genomes]
rs7194226	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7198264	0.83[ASN][1000 genomes]
rs7201738	0.89[ASN][1000 genomes]
rs7202378	0.83[ASN][1000 genomes]
rs7202626	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7206672	0.89[ASN][1000 genomes]
rs73598796	0.89[ASN][1000 genomes]
rs73600709	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73600733	0.89[ASN][1000 genomes]
rs73600740	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73603064	1.00[EUR][1000 genomes]
rs73603078	1.00[EUR][1000 genomes]
rs74029374	1.00[EUR][1000 genomes]
rs8046900	0.83[ASN][1000 genomes]
rs8048305	0.83[ASN][1000 genomes]
rs8048713	0.83[ASN][1000 genomes]
rs8049910	0.89[ASN][1000 genomes]
rs8053337	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8054497	0.89[ASN][1000 genomes]
rs8063026	0.83[ASN][1000 genomes]
rs8064052	0.83[ASN][1000 genomes]
rs8191135	1.00[EUR][1000 genomes]
rs8191155	1.00[EUR][1000 genomes]
rs8191158	1.00[EUR][1000 genomes]
rs8191198	1.00[EUR][1000 genomes]
rs8191207	1.00[EUR][1000 genomes]
rs8191211	1.00[EUR][1000 genomes]
rs8191220	1.00[EUR][1000 genomes]
rs9921872	0.89[ASN][1000 genomes]
rs9933207	0.83[ASN][1000 genomes]
rs9933660	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82045400-82049600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr16:82045600-82049400	Weak transcription	Stomach Mucosa	stomach
3	chr16:82045800-82048400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr16:82046400-82047400	Enhancers	Duodenum Mucosa	Duodenum

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