Variant report

Variant	rs41530451
Chromosome Location	chr16:82048749-82048750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr16:82048539-82049092	HEK293	kidney:	n/a	n/a
2	SETDB1	chr16:82048615-82049306	U2OS	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82043593..82046286-chr16:82047903..82050151,2	MCF-7	breast:

Variant related genes	Relation type
SDR42E1	TF binding region
ENSG00000184860	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs11865006	1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13333646	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13333826	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13334514	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16956130	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16956155	0.94[ASN][1000 genomes]
rs16956161	1.00[ASN][1000 genomes]
rs16956174	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.86[MEX][hapmap];0.84[MKK][hapmap];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16956191	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs16956202	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16956236	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16956242	1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16956248	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap]
rs28448330	0.86[EUR][1000 genomes]
rs28448747	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28558197	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28634487	0.86[EUR][1000 genomes]
rs3111351	0.86[GIH][hapmap];1.00[TSI][hapmap]
rs34132140	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36043523	1.00[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4262939	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4316745	1.00[ASN][1000 genomes]
rs4354930	1.00[ASN][1000 genomes]
rs4476172	1.00[ASN][1000 genomes]
rs4536470	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4541072	0.89[ASN][1000 genomes]
rs4580158	1.00[ASN][1000 genomes]
rs4591137	1.00[ASN][1000 genomes]
rs4636900	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs57566286	0.86[AMR][1000 genomes]
rs58097356	0.89[ASN][1000 genomes]
rs59151852	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59961458	0.94[ASN][1000 genomes]
rs59976110	1.00[ASN][1000 genomes]
rs60200374	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61644377	1.00[ASN][1000 genomes]
rs6564956	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6564957	0.89[ASN][1000 genomes]
rs6564960	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7187298	1.00[ASN][1000 genomes]
rs7188332	1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7193161	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7193258	0.94[ASN][1000 genomes]
rs7194226	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7195977	0.95[AMR][1000 genomes]
rs7196087	0.86[GIH][hapmap]
rs7198264	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7201738	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7202378	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7202626	1.00[ASN][1000 genomes]
rs7205983	0.87[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7206672	1.00[ASN][1000 genomes]
rs73598796	1.00[ASN][1000 genomes]
rs73600709	1.00[ASN][1000 genomes]
rs73600733	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73600740	0.89[ASN][1000 genomes]
rs74029358	0.86[AMR][1000 genomes]
rs8046220	0.86[EUR][1000 genomes]
rs8046900	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8048305	0.95[AMR][1000 genomes]
rs8048713	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs8049910	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8053337	0.89[ASN][1000 genomes]
rs8054497	1.00[ASN][1000 genomes]
rs8057181	0.87[ASN][1000 genomes]
rs8063026	0.94[ASN][1000 genomes]
rs8063275	1.00[MEX][hapmap]
rs8064052	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8191159	0.93[GIH][hapmap];1.00[TSI][hapmap]
rs9921872	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9933207	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9933660	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82045400-82049600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr16:82045600-82049400	Weak transcription	Stomach Mucosa	stomach
3	chr16:82048400-82049400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links