Variant report

Variant	rs7196087
Chromosome Location	chr16:82087663-82087664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:82082819..82085630-chr16:82086740..82089181,2	MCF-7	breast:
2	chr16:82081727..82084645-chr16:82085577..82088514,2	MCF-7	breast:
3	chr16:82087347..82089906-chr16:82091633..82093166,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11865006	1.00[JPT][hapmap]
rs13331247	0.80[ASN][1000 genomes]
rs13333826	0.93[GIH][hapmap];1.00[JPT][hapmap]
rs16956242	1.00[JPT][hapmap]
rs16956248	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs2317419	0.94[ASN][1000 genomes]
rs2955159	1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[ASN][1000 genomes]
rs3111351	1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs34132140	0.88[ASN][1000 genomes]
rs36043523	0.86[GIH][hapmap]
rs41530451	0.86[GIH][hapmap]
rs4354930	1.00[EUR][1000 genomes]
rs4536470	0.93[GIH][hapmap];1.00[TSI][hapmap]
rs4628962	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59151852	0.88[ASN][1000 genomes]
rs61537150	1.00[ASN][1000 genomes]
rs7186963	0.85[ASN][1000 genomes]
rs7188332	1.00[JPT][hapmap]
rs7190839	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7200696	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7200711	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7202378	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs73603064	0.85[ASN][1000 genomes]
rs73603078	1.00[ASN][1000 genomes]
rs8046220	1.00[ASN][1000 genomes]
rs8046900	0.93[GIH][hapmap];1.00[JPT][hapmap]
rs8191112	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8191135	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8191155	1.00[JPT][hapmap]
rs8191158	1.00[JPT][hapmap]
rs8191159	1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap]
rs8191198	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8191246	1.00[CHD][hapmap];0.85[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
4	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82076600-82094800	Enhancers	Fetal Intestine Large	intestine
2	chr16:82080000-82089200	Enhancers	Liver	Liver
3	chr16:82083800-82088800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr16:82084000-82088400	Weak transcription	Placenta	Placenta
5	chr16:82084000-82092400	Weak transcription	Colonic Mucosa	Colon
6	chr16:82084400-82088800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr16:82085200-82093000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr16:82085800-82089200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr16:82086200-82103800	Weak transcription	Gastric	stomach
10	chr16:82086400-82089000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr16:82087200-82088800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr16:82087400-82087800	Enhancers	Stomach Mucosa	stomach
13	chr16:82087400-82088800	Weak transcription	Pancreas	Pancrea
14	chr16:82087600-82088000	Weak transcription	Fetal Intestine Small	intestine
15	chr16:82087600-82089200	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links