Variant report

Variant	rs61537150
Chromosome Location	chr16:82095577-82095578
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:81923547..81924618-chr16:82095228..82096136,4	K562	blood:
2	chr16:81974221..81975055-chr16:82095227..82096139,4	MCF-7	breast:
3	chr16:82089033..82091508-chr16:82094074..82095651,2	K562	blood:
4	chr16:81974156..81975014-chr16:82095141..82095762,2	K562	blood:
5	chr16:64240204..64240760-chr16:82095477..82096225,2	MCF-7	breast:
6	chr16:82094565..82097297-chr16:82099404..82102388,2	K562	blood:
7	chr16:82095196..82096036-chr16:82263712..82264246,2	MCF-7	breast:
8	chr16:82064842..82065598-chr16:82095362..82096218,4	MCF-7	breast:
9	chr16:81974410..81975126-chr16:82095007..82095937,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000086696	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs13331247	0.80[ASN][1000 genomes]
rs16956161	1.00[EUR][1000 genomes]
rs16956202	1.00[EUR][1000 genomes]
rs2317419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2955159	0.88[ASN][1000 genomes]
rs3111351	0.82[ASN][1000 genomes]
rs34132140	0.88[ASN][1000 genomes]
rs3922901	1.00[AMR][1000 genomes]
rs4536470	1.00[EUR][1000 genomes]
rs4541072	1.00[EUR][1000 genomes]
rs4628962	1.00[ASN][1000 genomes]
rs58097356	1.00[EUR][1000 genomes]
rs59151852	0.88[ASN][1000 genomes]
rs59976110	1.00[EUR][1000 genomes]
rs6564956	1.00[EUR][1000 genomes]
rs6564957	1.00[EUR][1000 genomes]
rs7186963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7187298	1.00[EUR][1000 genomes]
rs7190839	0.94[ASN][1000 genomes]
rs7194226	1.00[EUR][1000 genomes]
rs7196087	1.00[ASN][1000 genomes]
rs7200696	0.94[ASN][1000 genomes]
rs7200711	0.94[ASN][1000 genomes]
rs7202378	0.88[ASN][1000 genomes]
rs7202626	1.00[EUR][1000 genomes]
rs73600709	1.00[EUR][1000 genomes]
rs73600740	1.00[EUR][1000 genomes]
rs73603064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73603078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73603095	1.00[AMR][1000 genomes]
rs74029374	1.00[EUR][1000 genomes]
rs8046220	1.00[ASN][1000 genomes]
rs8053337	1.00[EUR][1000 genomes]
rs8191069	1.00[AMR][1000 genomes]
rs8191084	1.00[AMR][1000 genomes]
rs8191095	1.00[AMR][1000 genomes]
rs8191112	1.00[ASN][1000 genomes]
rs8191124	1.00[AMR][1000 genomes]
rs8191135	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8191155	1.00[EUR][1000 genomes]
rs8191158	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8191164	1.00[AMR][1000 genomes]
rs8191178	1.00[AMR][1000 genomes]
rs8191184	1.00[AMR][1000 genomes]
rs8191198	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8191207	1.00[EUR][1000 genomes]
rs8191211	1.00[EUR][1000 genomes]
rs8191220	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
4	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1061709	chr16:82093183-82159867	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82086200-82103800	Weak transcription	Gastric	stomach
2	chr16:82089400-82105800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr16:82089600-82103800	Weak transcription	Pancreas	Pancrea
4	chr16:82090600-82095800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr16:82090600-82095800	Weak transcription	NHEK	skin
6	chr16:82090800-82101000	Enhancers	HepG2	liver
7	chr16:82092000-82096400	Enhancers	Fetal Intestine Small	intestine
8	chr16:82093800-82095600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr16:82093800-82096000	Weak transcription	Small Intestine	intestine
10	chr16:82094000-82096000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr16:82094200-82095600	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr16:82094200-82096000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr16:82094400-82095600	Weak transcription	NHLF	lung
14	chr16:82094400-82097000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr16:82094600-82096400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr16:82094600-82096600	Weak transcription	Colonic Mucosa	Colon
17	chr16:82094600-82096600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr16:82094600-82097600	Enhancers	Liver	Liver
19	chr16:82094600-82106200	Weak transcription	Lung	lung
20	chr16:82095000-82095600	Weak transcription	Placenta	Placenta
21	chr16:82095000-82097000	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr16:82095200-82096600	Enhancers	Fetal Intestine Large	intestine
23	chr16:82095400-82095600	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
24	chr16:82095400-82096000	Enhancers	Stomach Mucosa	stomach
25	chr16:82095400-82096200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr16:82095400-82096600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr16:82095400-82097400	Enhancers	NHDF-Ad	bronchial
28	chr16:82095400-82098000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr16:82095400-82098600	Enhancers	HMEC	breast

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