Variant report

Variant	rs8191178
Chromosome Location	chr16:82106089-82106090
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2317419	1.00[AMR][1000 genomes]
rs3922901	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61537150	1.00[AMR][1000 genomes]
rs7186963	1.00[AMR][1000 genomes]
rs7187059	1.00[AMR][1000 genomes]
rs73603064	1.00[AMR][1000 genomes]
rs73603078	1.00[AMR][1000 genomes]
rs73603095	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8191069	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8191084	1.00[AMR][1000 genomes]
rs8191095	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8191124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8191135	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs8191158	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs8191164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8191184	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
4	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1061709	chr16:82093183-82159867	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82094600-82106200	Weak transcription	Lung	lung
2	chr16:82097400-82116800	Weak transcription	Colonic Mucosa	Colon
3	chr16:82099600-82108800	Strong transcription	Placenta	Placenta
4	chr16:82101000-82108400	Strong transcription	Duodenum Mucosa	Duodenum
5	chr16:82102400-82107200	Strong transcription	Fetal Intestine Small	intestine
6	chr16:82102400-82107600	Strong transcription	Fetal Intestine Large	intestine
7	chr16:82102600-82108200	Strong transcription	HepG2	liver
8	chr16:82103000-82106600	Genic enhancers	Liver	Liver
9	chr16:82103400-82106800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr16:82103600-82106400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr16:82103800-82106400	Strong transcription	Sigmoid Colon	Sigmoid Colon
12	chr16:82104000-82106400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr16:82104000-82106600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr16:82104000-82106600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr16:82104000-82110200	Weak transcription	Pancreas	Pancrea
16	chr16:82104400-82116400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr16:82104800-82106400	Enhancers	Stomach Mucosa	stomach
18	chr16:82104800-82124400	Weak transcription	Fetal Stomach	stomach
19	chr16:82105200-82115000	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr16:82105400-82106200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr16:82105400-82106200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr16:82105400-82106400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr16:82105400-82106400	Enhancers	HSMMtube	muscle
24	chr16:82105400-82106600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr16:82105400-82106600	Enhancers	HMEC	breast
26	chr16:82105800-82106400	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links