Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr16:82088986-82090561	MCF10A-Er-Src	breast:	n/a	chr16:82089123-82089131 chr16:82089760-82089768
2	JUND	chr16:82088936-82089289	HepG2	liver:	n/a	n/a
3	POLR2A	chr16:82088903-82090381	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr16:82088990-82090528	MCF10A-Er-Src	breast:	n/a	chr16:82089434-82089445
5	FOS	chr16:82088988-82090534	MCF10A-Er-Src	breast:	n/a	chr16:82089434-82089445
6	MYC	chr16:82088969-82090189	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chr16:82088963-82090103	MCF10A-Er-Src	breast:	n/a	chr16:82089434-82089445
8	MYC	chr16:82088957-82090394	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82082819..82085630-chr16:82086740..82089181,2	MCF-7	breast:
2	chr16:82087347..82089906-chr16:82091633..82093166,2	K562	blood:

Variant related genes	Relation type
HSD17B2	TF binding region

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11863907	0.93[AMR][1000 genomes]
rs4628962	0.80[ASN][1000 genomes]
rs61537150	0.80[ASN][1000 genomes]
rs7186963	0.95[ASN][1000 genomes]
rs7196087	0.80[ASN][1000 genomes]
rs7200696	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7200711	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs73603064	0.95[ASN][1000 genomes]
rs73603078	0.80[ASN][1000 genomes]
rs73603093	0.93[AMR][1000 genomes]
rs8046220	0.80[ASN][1000 genomes]
rs8047676	0.93[AMR][1000 genomes]
rs8054838	0.93[AMR][1000 genomes]
rs8060685	0.93[AMR][1000 genomes]
rs8191112	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs8191155	0.90[ASN][1000 genomes]
rs8191156	0.93[AMR][1000 genomes]
rs8191158	0.90[ASN][1000 genomes]
rs8191159	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9929854	0.90[ASN][1000 genomes]
rs9931597	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
4	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82076600-82094800	Enhancers	Fetal Intestine Large	intestine
2	chr16:82080000-82089200	Enhancers	Liver	Liver
3	chr16:82084000-82092400	Weak transcription	Colonic Mucosa	Colon
4	chr16:82085200-82093000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr16:82085800-82089200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr16:82086200-82103800	Weak transcription	Gastric	stomach
7	chr16:82087600-82089200	Enhancers	HepG2	liver
8	chr16:82087800-82089600	Weak transcription	Stomach Mucosa	stomach
9	chr16:82088800-82089400	Strong transcription	Duodenum Mucosa	Duodenum
10	chr16:82088800-82089400	Enhancers	Lung	lung
11	chr16:82088800-82089600	Enhancers	Pancreas	Pancrea
12	chr16:82088800-82089800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr16:82088800-82090400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr16:82088800-82090600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr16:82088800-82090800	Enhancers	HMEC	breast
16	chr16:82089000-82089400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr16:82089000-82090200	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr16:82089000-82090600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr16:82089000-82090600	Enhancers	NHEK	skin
20	chr16:82089000-82090800	Enhancers	Fetal Intestine Small	intestine
21	chr16:82089000-82091400	Weak transcription	Placenta	Placenta

Quick Search: