Variant report

Variant	rs9933660
Chromosome Location	chr16:82022126-82022127
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82020585..82022664-chr16:82031489..82033612,2	MCF-7	breast:
2	chr16:81959648..81962343-chr16:82020413..82022447,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs13333826	0.87[CHD][hapmap]
rs13334514	0.94[ASN][1000 genomes]
rs16956130	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs16956155	0.88[ASN][1000 genomes]
rs16956161	0.94[ASN][1000 genomes]
rs16956174	0.87[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs16956191	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs16956202	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16956248	0.87[CHD][hapmap]
rs28448747	0.83[ASN][1000 genomes]
rs36043523	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs41530451	0.87[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4316745	0.94[ASN][1000 genomes]
rs4354930	0.94[ASN][1000 genomes]
rs4476172	0.94[ASN][1000 genomes]
rs4536470	0.87[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4541072	0.83[ASN][1000 genomes]
rs4580158	0.94[ASN][1000 genomes]
rs4591137	0.94[ASN][1000 genomes]
rs4636900	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs58097356	0.83[ASN][1000 genomes]
rs59961458	0.88[ASN][1000 genomes]
rs59976110	0.94[ASN][1000 genomes]
rs61644377	0.94[ASN][1000 genomes]
rs6564956	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6564957	0.83[ASN][1000 genomes]
rs7187298	0.94[ASN][1000 genomes]
rs7193258	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7194226	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7201738	0.94[ASN][1000 genomes]
rs7202626	0.94[ASN][1000 genomes]
rs7205983	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7206672	0.94[ASN][1000 genomes]
rs73598796	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73600709	0.94[ASN][1000 genomes]
rs73600733	0.94[ASN][1000 genomes]
rs73600740	0.83[ASN][1000 genomes]
rs8046900	0.87[CHD][hapmap]
rs8048713	0.88[ASN][1000 genomes]
rs8049910	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8053337	0.83[ASN][1000 genomes]
rs8054497	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8057181	0.82[ASN][1000 genomes]
rs8063026	0.88[ASN][1000 genomes]
rs9921872	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9933207	0.87[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82021600-82029600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr16:82021800-82030000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr16:82022000-82030000	Weak transcription	Duodenum Mucosa	Duodenum

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