Variant report

Variant	rs4476172
Chromosome Location	chr16:82010458-82010459
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:81994968..81997367-chr16:82009065..82010878,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260682	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs13334514	1.00[ASN][1000 genomes]
rs16956130	0.94[ASN][1000 genomes]
rs16956155	0.94[ASN][1000 genomes]
rs16956161	1.00[ASN][1000 genomes]
rs16956174	0.94[ASN][1000 genomes]
rs16956191	0.94[ASN][1000 genomes]
rs16956202	1.00[ASN][1000 genomes]
rs28448747	0.89[ASN][1000 genomes]
rs36043523	1.00[ASN][1000 genomes]
rs41530451	1.00[ASN][1000 genomes]
rs4316745	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4354930	1.00[ASN][1000 genomes]
rs4536470	1.00[ASN][1000 genomes]
rs4541072	0.89[ASN][1000 genomes]
rs4544234	0.82[AMR][1000 genomes]
rs4580158	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4591137	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4636900	0.89[ASN][1000 genomes]
rs58097356	0.89[ASN][1000 genomes]
rs59961458	0.94[ASN][1000 genomes]
rs59976110	1.00[ASN][1000 genomes]
rs61644377	1.00[ASN][1000 genomes]
rs6564956	1.00[ASN][1000 genomes]
rs6564957	0.89[ASN][1000 genomes]
rs7187298	1.00[ASN][1000 genomes]
rs7193258	0.94[ASN][1000 genomes]
rs7194226	1.00[ASN][1000 genomes]
rs7201738	1.00[ASN][1000 genomes]
rs7202626	1.00[ASN][1000 genomes]
rs7205983	0.89[ASN][1000 genomes]
rs7206672	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73598796	1.00[ASN][1000 genomes]
rs73600709	1.00[ASN][1000 genomes]
rs73600733	1.00[ASN][1000 genomes]
rs73600740	0.89[ASN][1000 genomes]
rs8048713	0.94[ASN][1000 genomes]
rs8049910	1.00[ASN][1000 genomes]
rs8053337	0.89[ASN][1000 genomes]
rs8054497	1.00[ASN][1000 genomes]
rs8057181	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs8063026	0.94[ASN][1000 genomes]
rs9921872	1.00[ASN][1000 genomes]
rs9933207	0.94[ASN][1000 genomes]
rs9933660	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82007600-82012000	Weak transcription	Pancreas	Pancrea
2	chr16:82008400-82011000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr16:82010200-82011000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell

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