Variant report

Variant	rs7205983
Chromosome Location	chr16:82024951-82024952
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:82023054..82026047-chr6:27776184..27778022,2	MCF-7	breast:
2	chr16:82024895..82026648-chr16:82031387..82033365,2	K562	blood:
3	chr16:82023035..82025651-chr16:82026724..82029302,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000203813	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs13333826	0.87[CHD][hapmap]
rs13334514	0.89[ASN][1000 genomes]
rs16956130	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16956155	0.94[ASN][1000 genomes]
rs16956161	0.89[ASN][1000 genomes]
rs16956174	0.87[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16956191	1.00[CEU][hapmap];0.87[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16956202	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs16956248	0.87[CHD][hapmap]
rs36043523	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs41530451	0.87[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4316745	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4354930	0.89[ASN][1000 genomes]
rs4476172	0.89[ASN][1000 genomes]
rs4536470	0.87[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4580158	0.89[ASN][1000 genomes]
rs4591137	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4636900	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59961458	0.94[ASN][1000 genomes]
rs59976110	0.89[ASN][1000 genomes]
rs61644377	0.89[ASN][1000 genomes]
rs6564956	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7187298	0.89[ASN][1000 genomes]
rs7193258	0.94[ASN][1000 genomes]
rs7194226	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7201738	0.89[ASN][1000 genomes]
rs7202626	0.89[ASN][1000 genomes]
rs7206672	0.89[ASN][1000 genomes]
rs73598796	0.89[ASN][1000 genomes]
rs73600709	0.89[ASN][1000 genomes]
rs73600733	0.89[ASN][1000 genomes]
rs8046900	0.87[CHD][hapmap]
rs8048713	0.94[ASN][1000 genomes]
rs8049910	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs8054497	0.89[ASN][1000 genomes]
rs8063026	0.94[ASN][1000 genomes]
rs9921872	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9933207	0.87[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9933660	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82021600-82029600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr16:82021800-82030000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr16:82022000-82030000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr16:82023000-82027800	Weak transcription	Primary T cells from cord blood	blood
5	chr16:82023000-82031800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr16:82023600-82025200	Enhancers	Fetal Intestine Large	intestine
7	chr16:82023600-82036600	Weak transcription	Fetal Kidney	kidney
8	chr16:82023800-82026200	Enhancers	Fetal Intestine Small	intestine
9	chr16:82023800-82027800	Weak transcription	Pancreas	Pancrea
10	chr16:82024000-82029400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr16:82024400-82030400	Weak transcription	Small Intestine	intestine
12	chr16:82024600-82030000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr16:82024800-82032800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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