Variant report

Variant	rs28634487
Chromosome Location	chr16:82054488-82054489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11865006	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13333646	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13333826	0.94[ASN][1000 genomes]
rs16956236	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16956242	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16956248	0.94[ASN][1000 genomes]
rs28448330	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28448747	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28558197	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34132140	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41530451	0.86[EUR][1000 genomes]
rs4262939	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4541072	0.89[ASN][1000 genomes]
rs58097356	0.89[ASN][1000 genomes]
rs59151852	0.83[ASN][1000 genomes]
rs60200374	0.94[ASN][1000 genomes]
rs6564957	0.89[ASN][1000 genomes]
rs6564960	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7188332	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7193161	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7195977	0.89[ASN][1000 genomes]
rs7198264	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7202378	0.83[ASN][1000 genomes]
rs73600733	0.86[EUR][1000 genomes]
rs73600740	0.89[ASN][1000 genomes]
rs74029358	0.89[ASN][1000 genomes]
rs8046220	1.00[EUR][1000 genomes]
rs8046900	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8048305	0.94[ASN][1000 genomes]
rs8053337	0.89[ASN][1000 genomes]
rs8064052	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82054200-82055400	Enhancers	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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