Variant report

Variant	rs8059606
Chromosome Location	chr16:81984671-81984672
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13330804	1.00[EUR][1000 genomes]
rs16956274	1.00[EUR][1000 genomes]
rs4395069	1.00[EUR][1000 genomes]
rs4423414	1.00[EUR][1000 genomes]
rs4435247	1.00[EUR][1000 genomes]
rs4485363	1.00[EUR][1000 genomes]
rs4520828	1.00[EUR][1000 genomes]
rs4889446	1.00[EUR][1000 genomes]
rs57503200	1.00[EUR][1000 genomes]
rs61398036	1.00[EUR][1000 genomes]
rs61654022	1.00[EUR][1000 genomes]
rs7190253	1.00[EUR][1000 genomes]
rs7192075	1.00[EUR][1000 genomes]
rs7203384	1.00[EUR][1000 genomes]
rs73598737	1.00[EUR][1000 genomes]
rs74029313	1.00[EUR][1000 genomes]
rs8052451	1.00[EUR][1000 genomes]
rs8062348	1.00[EUR][1000 genomes]
rs8191050	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059532	chr16:81981559-81995177	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81925800-81992600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr16:81946200-81985200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr16:81954800-81991800	Weak transcription	Fetal Thymus	thymus
4	chr16:81962600-81995800	Weak transcription	Small Intestine	intestine
5	chr16:81970200-81990800	Weak transcription	Pancreas	Pancrea
6	chr16:81970800-81991200	Weak transcription	Thymus	Thymus
7	chr16:81970800-81994600	Weak transcription	Fetal Intestine Large	intestine
8	chr16:81972200-81993200	Weak transcription	Fetal Kidney	kidney
9	chr16:81975600-81984800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr16:81981800-81985400	ZNF genes & repeats	Primary B cells from cord blood	blood
11	chr16:81982000-81985000	ZNF genes & repeats	GM12878-XiMat	blood
12	chr16:81982000-81985600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
13	chr16:81982000-81986800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
14	chr16:81982400-81987000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr16:81982600-81990200	Weak transcription	Lung	lung
16	chr16:81982600-81991200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr16:81982600-81996600	Weak transcription	Fetal Stomach	stomach
18	chr16:81982600-82007000	Weak transcription	Gastric	stomach
19	chr16:81982800-81985400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
20	chr16:81983000-81985400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr16:81983200-81985400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
22	chr16:81983800-81985400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
23	chr16:81984600-81984800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
24	chr16:81984600-81985000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr16:81984600-81985000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
26	chr16:81984600-81985000	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
27	chr16:81984600-81985000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr16:81984600-81985000	ZNF genes & repeats	Fetal Intestine Small	intestine
29	chr16:81984600-81985000	ZNF genes & repeats	Placenta	Placenta
30	chr16:81984600-81985000	ZNF genes & repeats	Left Ventricle	heart
31	chr16:81984600-81985000	ZNF genes & repeats	Spleen	Spleen
32	chr16:81984600-81985400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
33	chr16:81984600-81985400	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
34	chr16:81984600-81985400	ZNF genes & repeats	Adipose Nuclei	Adipose
35	chr16:81984600-81985600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr16:81984600-81985600	ZNF genes & repeats	Liver	Liver
37	chr16:81984600-81985600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
38	chr16:81984600-81985600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

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