Variant report

Variant	rs9926701
Chromosome Location	chr16:82031981-82031982
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:82030963..82032834-chr16:82203698..82205625,2	MCF-7	breast:
2	chr16:81972632..81975511-chr16:82029375..82034440,5	MCF-7	breast:
3	chr16:82030016..82033170-chr16:82033184..82035673,3	K562	blood:
4	chr16:82020585..82022664-chr16:82031489..82033612,2	MCF-7	breast:
5	chr16:82030016..82033170-chr16:82033184..82036470,3	K562	blood:
6	chr16:82031112..82032708-chr16:82039797..82042760,2	MCF-7	breast:
7	chr16:82024895..82026648-chr16:82031387..82033365,2	K562	blood:
8	chr16:82031950..82034782-chr16:82038461..82041370,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000261029	Chromatin interaction
ENSG00000135698	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11859929	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs11861143	1.00[ASN][1000 genomes]
rs11861598	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11862886	0.85[AFR][1000 genomes]
rs11865090	1.00[ASN][1000 genomes]
rs13335950	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13336004	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13336862	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs16956140	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16956146	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16956212	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs16956274	1.00[ASW][hapmap];0.80[YRI][hapmap]
rs28593579	0.86[AFR][1000 genomes]
rs28676286	0.86[AFR][1000 genomes]
rs28709269	0.86[AFR][1000 genomes]
rs28880295	1.00[ASN][1000 genomes]
rs4383138	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60624959	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7184155	1.00[ASN][1000 genomes]
rs7194931	0.84[AFR][1000 genomes]
rs7199278	1.00[ASN][1000 genomes]
rs7200056	1.00[ASN][1000 genomes]
rs7205168	1.00[ASN][1000 genomes]
rs7206573	1.00[ASN][1000 genomes]
rs72820814	1.00[ASN][1000 genomes]
rs72820823	1.00[ASN][1000 genomes]
rs72823102	1.00[ASN][1000 genomes]
rs72824903	1.00[ASN][1000 genomes]
rs72824907	1.00[ASN][1000 genomes]
rs72824911	1.00[ASN][1000 genomes]
rs8047385	1.00[ASN][1000 genomes]
rs8049006	1.00[ASN][1000 genomes]
rs8051345	1.00[ASN][1000 genomes]
rs9924347	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9925255	1.00[ASN][1000 genomes]
rs9926028	0.84[ASW][hapmap];0.91[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9926471	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs9932209	1.00[ASN][1000 genomes]
rs9934119	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82023600-82036600	Weak transcription	Fetal Kidney	kidney
2	chr16:82024800-82032800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr16:82027400-82044200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr16:82027600-82033200	Weak transcription	Primary B cells from cord blood	blood
5	chr16:82027800-82041600	Strong transcription	Primary T cells from cord blood	blood
6	chr16:82028600-82032000	Enhancers	Colon Smooth Muscle	Colon
7	chr16:82029200-82032200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr16:82029400-82041400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr16:82030000-82032400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr16:82030000-82034000	Strong transcription	Thymus	Thymus
11	chr16:82030000-82034800	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr16:82030000-82035000	Weak transcription	GM12878-XiMat	blood
13	chr16:82030000-82044000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr16:82030200-82032000	Enhancers	Placenta Amnion	Placenta Amnion
15	chr16:82030200-82032200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr16:82030200-82032200	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr16:82030200-82034200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr16:82030200-82034800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr16:82030200-82034800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr16:82030400-82032000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr16:82030400-82032000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr16:82030400-82032000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr16:82030400-82032200	Enhancers	Rectal Smooth Muscle	rectum
24	chr16:82030400-82032400	Enhancers	NHDF-Ad	bronchial
25	chr16:82030400-82033200	Weak transcription	Colonic Mucosa	Colon
26	chr16:82030600-82032200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr16:82030600-82032800	Weak transcription	Esophagus	oesophagus
28	chr16:82030600-82037800	Weak transcription	Aorta	Aorta
29	chr16:82030600-82044200	Weak transcription	Small Intestine	intestine
30	chr16:82030800-82032200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr16:82030800-82034800	Weak transcription	Fetal Muscle Trunk	muscle
32	chr16:82030800-82042400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr16:82031000-82032200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr16:82031000-82032600	Weak transcription	Spleen	Spleen
35	chr16:82031000-82033000	Strong transcription	Primary hematopoietic stem cells	blood
36	chr16:82031000-82044400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr16:82031200-82032800	Weak transcription	Lung	lung
38	chr16:82031200-82038600	Strong transcription	Duodenum Mucosa	Duodenum
39	chr16:82031400-82032000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr16:82031400-82032000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr16:82031400-82032000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr16:82031400-82032000	Weak transcription	Fetal Intestine Large	intestine
43	chr16:82031400-82032200	Weak transcription	Fetal Intestine Small	intestine
44	chr16:82031400-82032400	Enhancers	HSMMtube	muscle
45	chr16:82031400-82032400	Enhancers	HUVEC	blood vessel
46	chr16:82031400-82034000	Strong transcription	Primary B cells from peripheral blood	blood
47	chr16:82031400-82034000	Strong transcription	Fetal Thymus	thymus
48	chr16:82031400-82034600	Strong transcription	Liver	Liver
49	chr16:82031400-82035000	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr16:82031600-82032200	Weak transcription	Pancreas	Pancrea

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