Variant report

Variant	rs16956212
Chromosome Location	chr16:82044925-82044926
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82044521..82045314-chr3:149470159..149470736,2	HCT-116	colon:
2	chr1:45186606..45187940-chr16:82044607..82045675,4	HCT-116	colon:

Variant related genes	Relation type
ENSG00000199377	Chromatin interaction
ENSG00000114744	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11859929	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11861598	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs11862886	0.90[AFR][1000 genomes]
rs12102588	1.00[EUR][1000 genomes]
rs13331078	1.00[EUR][1000 genomes]
rs13333401	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13336862	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13338881	1.00[EUR][1000 genomes]
rs16956238	0.84[AFR][1000 genomes]
rs28435702	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28593579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28666081	1.00[EUR][1000 genomes]
rs28676286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28709269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4399528	0.83[AMR][1000 genomes]
rs7187542	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7194931	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7203187	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7203196	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7203437	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9926028	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9926471	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9926701	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9937619	1.00[EUR][1000 genomes]
rs9941115	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82043200-82045000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:82044000-82045400	Active TSS	Fetal Intestine Small	intestine
3	chr16:82044200-82045200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr16:82044200-82045200	Active TSS	Fetal Thymus	thymus
5	chr16:82044200-82045200	Active TSS	K562	blood
6	chr16:82044200-82045400	Active TSS	Fetal Intestine Large	intestine
7	chr16:82044200-82045400	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr16:82044200-82045600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr16:82044200-82045600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr16:82044200-82045600	Active TSS	Fetal Kidney	kidney
11	chr16:82044200-82045600	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr16:82044200-82045600	ZNF genes & repeats	GM12878-XiMat	blood
13	chr16:82044400-82045000	Active TSS	Osteobl	bone
14	chr16:82044400-82045200	Active TSS	Primary T helper naive cells from peripheral blood	blood
15	chr16:82044400-82045200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr16:82044400-82045200	Active TSS	Colonic Mucosa	Colon
17	chr16:82044400-82045200	Active TSS	Esophagus	oesophagus
18	chr16:82044400-82045200	Active TSS	HMEC	breast
19	chr16:82044400-82045200	Active TSS	NHEK	skin
20	chr16:82044400-82045400	Active TSS	Colon Smooth Muscle	Colon
21	chr16:82044400-82045400	Active TSS	Placenta Amnion	Placenta Amnion
22	chr16:82044400-82045400	Active TSS	Rectal Mucosa Donor 31	rectum
23	chr16:82044400-82045400	Active TSS	Stomach Mucosa	stomach
24	chr16:82044400-82045400	Active TSS	A549	lung
25	chr16:82044400-82045600	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr16:82044400-82045600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
27	chr16:82044400-82045600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
28	chr16:82044400-82045600	Active TSS	Rectal Smooth Muscle	rectum
29	chr16:82044400-82046000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr16:82044600-82045000	Flanking Active TSS	Primary B cells from cord blood	blood
31	chr16:82044600-82045000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr16:82044600-82045000	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
33	chr16:82044600-82045000	Active TSS	Lung	lung
34	chr16:82044600-82045000	Bivalent/Poised TSS	NHLF	lung
35	chr16:82044600-82045200	Bivalent/Poised TSS	Primary neutrophils fromperipheralblood	blood
36	chr16:82044600-82045200	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
37	chr16:82044600-82045200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
38	chr16:82044600-82045200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
39	chr16:82044600-82045200	Active TSS	Gastric	stomach
40	chr16:82044600-82045200	Active TSS	Pancreas	Pancrea
41	chr16:82044600-82045200	Active TSS	Sigmoid Colon	Sigmoid Colon
42	chr16:82044600-82045200	Active TSS	Small Intestine	intestine
43	chr16:82044600-82045200	Active TSS	Thymus	Thymus
44	chr16:82044600-82045400	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr16:82044600-82045400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
46	chr16:82044600-82045400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
47	chr16:82044600-82045400	Bivalent/Poised TSS	Adipose Nuclei	Adipose
48	chr16:82044600-82045400	Bivalent/Poised TSS	Fetal Stomach	stomach
49	chr16:82044600-82045400	Bivalent/Poised TSS	Left Ventricle	heart
50	chr16:82044600-82045400	Active TSS	Right Atrium	heart

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