Variant report

Variant	rs28666081
Chromosome Location	chr16:82045684-82045685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11859929	1.00[EUR][1000 genomes]
rs12102588	1.00[EUR][1000 genomes]
rs13331078	1.00[EUR][1000 genomes]
rs13333401	1.00[EUR][1000 genomes]
rs13336862	1.00[EUR][1000 genomes]
rs13338881	1.00[EUR][1000 genomes]
rs16956212	1.00[EUR][1000 genomes]
rs28435702	1.00[EUR][1000 genomes]
rs28593579	1.00[EUR][1000 genomes]
rs28676286	1.00[EUR][1000 genomes]
rs28709269	1.00[EUR][1000 genomes]
rs7187542	1.00[EUR][1000 genomes]
rs7194931	1.00[EUR][1000 genomes]
rs7203187	1.00[EUR][1000 genomes]
rs7203196	1.00[EUR][1000 genomes]
rs7203437	1.00[EUR][1000 genomes]
rs9921872	0.81[AMR][1000 genomes]
rs9926028	1.00[EUR][1000 genomes]
rs9926471	1.00[EUR][1000 genomes]
rs9937619	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82044400-82046000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr16:82044800-82045800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
3	chr16:82045200-82045800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
4	chr16:82045200-82045800	Bivalent Enhancer	Small Intestine	intestine
5	chr16:82045400-82045800	Enhancers	Gastric	stomach
6	chr16:82045400-82045800	Active TSS	Stomach Smooth Muscle	stomach
7	chr16:82045400-82049600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr16:82045600-82045800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr16:82045600-82045800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
10	chr16:82045600-82045800	Active TSS	Primary T helper cells fromperipheralblood	blood
11	chr16:82045600-82045800	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr16:82045600-82045800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr16:82045600-82045800	Enhancers	Fetal Intestine Small	intestine
14	chr16:82045600-82046000	Active TSS	Primary T helper naive cells from peripheral blood	blood
15	chr16:82045600-82046000	Enhancers	Duodenum Mucosa	Duodenum
16	chr16:82045600-82049400	Weak transcription	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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