Variant report

Variant	rs12102588
Chromosome Location	chr16:82011412-82011413
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11859929	1.00[EUR][1000 genomes]
rs13331078	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13333401	1.00[EUR][1000 genomes]
rs13336862	1.00[EUR][1000 genomes]
rs13338881	1.00[EUR][1000 genomes]
rs16956212	1.00[EUR][1000 genomes]
rs28435702	1.00[EUR][1000 genomes]
rs28593579	1.00[EUR][1000 genomes]
rs28666081	1.00[EUR][1000 genomes]
rs28676286	1.00[EUR][1000 genomes]
rs28709269	1.00[EUR][1000 genomes]
rs7187542	1.00[EUR][1000 genomes]
rs7194931	1.00[EUR][1000 genomes]
rs7203187	1.00[EUR][1000 genomes]
rs7203196	1.00[EUR][1000 genomes]
rs7203437	1.00[EUR][1000 genomes]
rs9926028	1.00[EUR][1000 genomes]
rs9926471	1.00[EUR][1000 genomes]
rs9937619	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82007600-82012000	Weak transcription	Pancreas	Pancrea
2	chr16:82011000-82011800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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