Variant report

Variant	rs16956238
Chromosome Location	chr16:82060286-82060287
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11150434	1.00[EUR][1000 genomes]
rs11150435	1.00[EUR][1000 genomes]
rs11859929	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs11861598	0.82[ASW][hapmap];0.82[LWK][hapmap];1.00[YRI][hapmap]
rs11862886	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13336862	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs13337293	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16956212	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs16956244	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs16956274	0.82[ASW][hapmap];1.00[GIH][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap]
rs16956406	1.00[TSI][hapmap]
rs28593579	0.84[AFR][1000 genomes]
rs28676286	0.84[AFR][1000 genomes]
rs28709269	0.84[AFR][1000 genomes]
rs4435247	1.00[TSI][hapmap]
rs4889446	1.00[TSI][hapmap]
rs60624959	1.00[AMR][1000 genomes]
rs60912325	1.00[EUR][1000 genomes]
rs7194931	0.82[AFR][1000 genomes]
rs7195508	1.00[EUR][1000 genomes]
rs7196078	1.00[EUR][1000 genomes]
rs7205968	1.00[EUR][1000 genomes]
rs8045494	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8046533	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8048090	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs8049423	1.00[EUR][1000 genomes]
rs8049750	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8056343	1.00[EUR][1000 genomes]
rs8058561	1.00[EUR][1000 genomes]
rs8062348	1.00[TSI][hapmap]
rs8063275	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs8191048	1.00[GIH][hapmap];1.00[EUR][1000 genomes]
rs8191049	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8191050	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs8191080	1.00[EUR][1000 genomes]
rs8191081	1.00[EUR][1000 genomes]
rs8191089	1.00[EUR][1000 genomes]
rs8191167	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs9926028	1.00[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs9926211	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs9926471	1.00[YRI][hapmap]
rs9926701	0.82[ASW][hapmap];0.82[LWK][hapmap];1.00[YRI][hapmap]
rs9941115	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82057200-82061000	Weak transcription	Stomach Mucosa	stomach
2	chr16:82058000-82065600	Weak transcription	Gastric	stomach
3	chr16:82058600-82062400	Enhancers	Duodenum Mucosa	Duodenum
4	chr16:82059400-82060600	Enhancers	Small Intestine	intestine
5	chr16:82059400-82062200	Enhancers	Fetal Intestine Large	intestine
6	chr16:82060000-82062000	Enhancers	Fetal Intestine Small	intestine

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