Variant report

Variant	rs7196078
Chromosome Location	chr16:82057564-82057565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11150434	1.00[EUR][1000 genomes]
rs11150435	1.00[EUR][1000 genomes]
rs13337293	1.00[EUR][1000 genomes]
rs16956238	1.00[EUR][1000 genomes]
rs60912325	1.00[EUR][1000 genomes]
rs7195508	1.00[EUR][1000 genomes]
rs7205968	1.00[EUR][1000 genomes]
rs8045494	1.00[EUR][1000 genomes]
rs8046533	1.00[EUR][1000 genomes]
rs8049423	1.00[EUR][1000 genomes]
rs8049750	1.00[EUR][1000 genomes]
rs8056343	1.00[EUR][1000 genomes]
rs8058561	1.00[EUR][1000 genomes]
rs8191048	1.00[EUR][1000 genomes]
rs8191049	1.00[EUR][1000 genomes]
rs8191080	1.00[EUR][1000 genomes]
rs8191081	1.00[EUR][1000 genomes]
rs8191089	1.00[EUR][1000 genomes]
rs9941115	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82055200-82059400	Weak transcription	Small Intestine	intestine
2	chr16:82056200-82058200	Enhancers	Duodenum Mucosa	Duodenum
3	chr16:82057200-82057800	Weak transcription	Gastric	stomach
4	chr16:82057200-82061000	Weak transcription	Stomach Mucosa	stomach
5	chr16:82057400-82059400	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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