Variant report

Variant	rs11150435
Chromosome Location	chr16:82071591-82071592
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82066760..82068937-chr16:82070663..82072177,2	K562	blood:

Variant related genes	Relation type
ENSG00000086696	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11150434	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13337293	1.00[EUR][1000 genomes]
rs16956238	1.00[EUR][1000 genomes]
rs4318193	0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs60912325	1.00[EUR][1000 genomes]
rs7195508	1.00[EUR][1000 genomes]
rs7196078	1.00[EUR][1000 genomes]
rs7200711	0.80[YRI][hapmap]
rs7205968	1.00[EUR][1000 genomes]
rs8045494	1.00[EUR][1000 genomes]
rs8046533	1.00[EUR][1000 genomes]
rs8049423	1.00[EUR][1000 genomes]
rs8049750	1.00[EUR][1000 genomes]
rs8056343	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8058561	1.00[EUR][1000 genomes]
rs8060993	0.83[YRI][hapmap];0.86[AMR][1000 genomes]
rs8191048	0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs8191049	0.89[YRI][hapmap];1.00[EUR][1000 genomes]
rs8191080	1.00[EUR][1000 genomes]
rs8191081	1.00[EUR][1000 genomes]
rs8191089	1.00[EUR][1000 genomes]
rs9941115	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82067400-82077000	Weak transcription	Right Atrium	heart
2	chr16:82068000-82072800	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr16:82068200-82071600	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr16:82068600-82071600	Active TSS	Fetal Intestine Large	intestine
5	chr16:82068600-82071600	Active TSS	Fetal Intestine Small	intestine
6	chr16:82068600-82071800	Active TSS	Liver	Liver
7	chr16:82068600-82072000	Active TSS	Duodenum Mucosa	Duodenum
8	chr16:82068600-82072600	Active TSS	Placenta	Placenta
9	chr16:82068800-82077400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr16:82069200-82074000	Weak transcription	Fetal Lung	lung
11	chr16:82069200-82076600	Weak transcription	HSMMtube	muscle
12	chr16:82069200-82077400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr16:82069400-82075200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr16:82070000-82072000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr16:82070000-82072000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr16:82070000-82072200	Weak transcription	Gastric	stomach
17	chr16:82070200-82083400	Weak transcription	Colonic Mucosa	Colon
18	chr16:82070400-82071600	Flanking Active TSS	HepG2	liver
19	chr16:82070800-82071800	Weak transcription	Fetal Stomach	stomach
20	chr16:82070800-82074200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr16:82070800-82074800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr16:82070800-82081200	Weak transcription	Pancreas	Pancrea
23	chr16:82071200-82071600	Enhancers	HUVEC	blood vessel
24	chr16:82071200-82072400	Weak transcription	Fetal Kidney	kidney
25	chr16:82071400-82071800	Enhancers	Stomach Mucosa	stomach

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