Variant report

Variant	rs16956146
Chromosome Location	chr16:82027438-82027439
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:82023035..82025651-chr16:82026724..82029302,2	MCF-7	breast:
2	chr16:82027010..82029205-chr16:82052580..82054866,2	MCF-7	breast:
3	chr16:82017852..82020203-chr16:82026768..82030109,3	K562	blood:
4	chr16:82020062..82021954-chr16:82025787..82028162,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11861143	1.00[ASN][1000 genomes]
rs11861598	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11865090	1.00[ASN][1000 genomes]
rs13335950	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13336004	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16956140	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28880295	1.00[ASN][1000 genomes]
rs4383138	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60624959	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7184155	1.00[ASN][1000 genomes]
rs7199278	1.00[ASN][1000 genomes]
rs7200056	1.00[ASN][1000 genomes]
rs7205168	1.00[ASN][1000 genomes]
rs7206573	1.00[ASN][1000 genomes]
rs72820814	1.00[ASN][1000 genomes]
rs72820823	1.00[ASN][1000 genomes]
rs72823102	1.00[ASN][1000 genomes]
rs72824903	1.00[ASN][1000 genomes]
rs72824907	1.00[ASN][1000 genomes]
rs72824911	1.00[ASN][1000 genomes]
rs8047385	1.00[ASN][1000 genomes]
rs8049006	1.00[ASN][1000 genomes]
rs8051345	1.00[ASN][1000 genomes]
rs9924347	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9925255	1.00[ASN][1000 genomes]
rs9926701	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9932209	1.00[ASN][1000 genomes]
rs9934119	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82021600-82029600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr16:82021800-82030000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr16:82022000-82030000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr16:82023000-82027800	Weak transcription	Primary T cells from cord blood	blood
5	chr16:82023000-82031800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr16:82023600-82036600	Weak transcription	Fetal Kidney	kidney
7	chr16:82023800-82027800	Weak transcription	Pancreas	Pancrea
8	chr16:82024000-82029400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr16:82024400-82030400	Weak transcription	Small Intestine	intestine
10	chr16:82024600-82030000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr16:82024800-82032800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr16:82025200-82030000	Weak transcription	Fetal Intestine Large	intestine
13	chr16:82026200-82028200	Weak transcription	Fetal Intestine Small	intestine
14	chr16:82026400-82030000	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr16:82026600-82028200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr16:82026600-82030200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr16:82026600-82031000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr16:82026800-82028200	Weak transcription	Fetal Stomach	stomach
19	chr16:82027000-82031200	Weak transcription	Fetal Lung	lung
20	chr16:82027200-82028800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr16:82027400-82031400	Weak transcription	Primary B cells from peripheral blood	blood
22	chr16:82027400-82044200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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