Variant report

Variant	rs16956133
Chromosome Location	chr15:72025421-72025422
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:71919176..71921594-chr15:72024992..72027078,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11858936	1.00[EUR][1000 genomes]
rs12437539	1.00[EUR][1000 genomes]
rs12915432	1.00[EUR][1000 genomes]
rs1501421	1.00[EUR][1000 genomes]
rs16956136	0.80[YRI][hapmap];0.83[AFR][1000 genomes]
rs2047685	1.00[EUR][1000 genomes]
rs2047690	1.00[EUR][1000 genomes]
rs2047691	1.00[EUR][1000 genomes]
rs4328388	1.00[EUR][1000 genomes]
rs4365247	1.00[EUR][1000 genomes]
rs4777449	1.00[EUR][1000 genomes]
rs73430234	1.00[EUR][1000 genomes]
rs8036340	1.00[EUR][1000 genomes]
rs8041263	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv904335	chr15:72018469-72064719	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72009200-72030000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:72017000-72048800	Weak transcription	Placenta	Placenta
3	chr15:72019200-72030400	Weak transcription	Lung	lung
4	chr15:72019600-72030000	Weak transcription	Esophagus	oesophagus
5	chr15:72020200-72039000	Weak transcription	Pancreas	Pancrea
6	chr15:72020400-72025800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:72021600-72071400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:72022000-72027600	Enhancers	Liver	Liver
9	chr15:72022200-72025800	Enhancers	Fetal Heart	heart
10	chr15:72022400-72025600	Strong transcription	NHEK	skin
11	chr15:72022600-72025600	Strong transcription	Fetal Muscle Trunk	muscle
12	chr15:72022800-72027400	Weak transcription	NHLF	lung
13	chr15:72023000-72025600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:72023400-72025600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr15:72023400-72025600	Strong transcription	Fetal Stomach	stomach
16	chr15:72023400-72025800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:72023600-72025800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr15:72023800-72028200	Enhancers	Fetal Intestine Large	intestine
19	chr15:72024200-72025800	Enhancers	Fetal Intestine Small	intestine
20	chr15:72024400-72025800	Enhancers	Small Intestine	intestine
21	chr15:72024400-72026000	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr15:72024400-72026200	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr15:72024600-72045600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr15:72024800-72025600	Enhancers	A549	lung
25	chr15:72025200-72025600	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr15:72025200-72025800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr15:72025200-72029600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr15:72025200-72030000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr15:72025200-72030600	Weak transcription	Left Ventricle	heart
30	chr15:72025400-72025600	Enhancers	Colonic Mucosa	Colon
31	chr15:72025400-72025600	Flanking Active TSS	HepG2	liver
32	chr15:72025400-72028800	Weak transcription	Stomach Mucosa	stomach
33	chr15:72025400-72030000	Weak transcription	Fetal Muscle Leg	muscle
34	chr15:72025400-72031400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr15:72025400-72039200	Weak transcription	Gastric	stomach

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