Variant report

Variant	rs73430234
Chromosome Location	chr15:71997825-71997826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYO9A-1	chr15:71996990-71998777	ucscGeneNc_uc002awb_1

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11858936	1.00[EUR][1000 genomes]
rs12437539	1.00[EUR][1000 genomes]
rs12915432	1.00[EUR][1000 genomes]
rs1501421	1.00[EUR][1000 genomes]
rs16956133	1.00[EUR][1000 genomes]
rs2047685	1.00[EUR][1000 genomes]
rs2047690	1.00[EUR][1000 genomes]
rs2047691	1.00[EUR][1000 genomes]
rs4328388	1.00[EUR][1000 genomes]
rs4365247	1.00[EUR][1000 genomes]
rs4777449	1.00[EUR][1000 genomes]
rs8036340	1.00[EUR][1000 genomes]
rs8041263	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:71985200-71999000	Weak transcription	Fetal Stomach	stomach
2	chr15:71985200-71999000	Weak transcription	Pancreas	Pancrea
3	chr15:71985200-71999200	Weak transcription	Aorta	Aorta
4	chr15:71985200-72000400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr15:71985600-71998800	Weak transcription	Fetal Muscle Leg	muscle
6	chr15:71991000-72000400	Weak transcription	Fetal Intestine Small	intestine
7	chr15:71994400-71999200	Weak transcription	Fetal Lung	lung
8	chr15:71994800-71999400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr15:71996600-71999400	Weak transcription	Gastric	stomach
10	chr15:71996800-71998000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:71997000-71998000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:71997000-71998000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr15:71997000-71998000	Enhancers	HSMMtube	muscle
14	chr15:71997000-71998000	Enhancers	NHEK	skin
15	chr15:71997000-71998200	Enhancers	Fetal Heart	heart
16	chr15:71997000-71998600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr15:71997000-71999200	Enhancers	Hela-S3	cervix
18	chr15:71997000-71999800	Enhancers	Left Ventricle	heart
19	chr15:71997000-72001000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:71997000-72001400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr15:71997000-72001400	Enhancers	NHDF-Ad	bronchial
22	chr15:71997000-72003000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr15:71997200-71998000	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr15:71997200-71998000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr15:71997200-71998000	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr15:71997200-71998000	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr15:71997200-71998000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr15:71997200-71998000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr15:71997200-71998200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr15:71997200-72003000	Enhancers	NHLF	lung
31	chr15:71997400-71998000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr15:71997400-71998000	Enhancers	Ovary	ovary
33	chr15:71997400-71998000	Enhancers	Placenta Amnion	Placenta Amnion
34	chr15:71997400-71998000	Bivalent Enhancer	Osteobl	bone
35	chr15:71997400-71998400	Enhancers	NH-A	brain
36	chr15:71997400-71998800	Enhancers	HSMM	muscle
37	chr15:71997400-72001400	Enhancers	Right Ventricle	heart
38	chr15:71997600-71998000	Enhancers	Muscle Satellite Cultured Cells	--
39	chr15:71997600-71998000	Enhancers	Colon Smooth Muscle	Colon
40	chr15:71997600-71998000	Strong transcription	Esophagus	oesophagus
41	chr15:71997600-71998200	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr15:71997600-71999200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr15:71997800-71998000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr15:71997800-71998000	Enhancers	Duodenum Smooth Muscle	Duodenum
45	chr15:71997800-71998000	Enhancers	Lung	lung
46	chr15:71997800-72002000	Enhancers	Stomach Mucosa	stomach

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