Variant report

Variant	rs16956326
Chromosome Location	chr16:82089287-82089288
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr16:82088986-82090561	MCF10A-Er-Src	breast:	n/a	chr16:82089123-82089131 chr16:82089760-82089768
2	CEBPB	chr16:82089023-82089364	HepG2	liver:	n/a	chr16:82089208-82089221
3	POLR2A	chr16:82089161-82090615	MCF10A-Er-Src	breast:	n/a	n/a
4	JUND	chr16:82088936-82089289	HepG2	liver:	n/a	n/a
5	POLR2A	chr16:82088903-82090381	MCF10A-Er-Src	breast:	n/a	n/a
6	FOS	chr16:82088990-82090528	MCF10A-Er-Src	breast:	n/a	chr16:82089434-82089445
7	FOS	chr16:82089050-82090527	MCF10A-Er-Src	breast:	n/a	chr16:82089434-82089445
8	STAT3	chr16:82089045-82090528	MCF10A-Er-Src	breast:	n/a	chr16:82089123-82089131 chr16:82089760-82089768
9	USF2	chr16:82089286-82089442	HepG2	liver:	n/a	n/a
10	FOS	chr16:82088988-82090534	MCF10A-Er-Src	breast:	n/a	chr16:82089434-82089445
11	STAT3	chr16:82089217-82090573	MCF10A-Er-Src	breast:	n/a	chr16:82089760-82089768
12	MYC	chr16:82088969-82090189	MCF10A-Er-Src	breast:	n/a	n/a
13	STAT3	chr16:82089093-82090306	MCF10A-Er-Src	breast:	n/a	chr16:82089123-82089131 chr16:82089760-82089768
14	FOS	chr16:82088963-82090103	MCF10A-Er-Src	breast:	n/a	chr16:82089434-82089445
15	MYC	chr16:82088957-82090394	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82087347..82089906-chr16:82091633..82093166,2	K562	blood:

Variant related genes	Relation type
HSD17B2	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16956282	1.00[EUR][1000 genomes]
rs4258604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4587969	1.00[EUR][1000 genomes]
rs58960032	0.83[AMR][1000 genomes]
rs7203108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73603089	1.00[EUR][1000 genomes]
rs74029368	1.00[EUR][1000 genomes]
rs74029369	1.00[EUR][1000 genomes]
rs74029370	1.00[EUR][1000 genomes]
rs74029371	1.00[EUR][1000 genomes]
rs8191100	1.00[EUR][1000 genomes]
rs8191102	1.00[EUR][1000 genomes]
rs8191163	1.00[EUR][1000 genomes]
rs8191181	1.00[EUR][1000 genomes]
rs8191187	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
4	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82076600-82094800	Enhancers	Fetal Intestine Large	intestine
2	chr16:82084000-82092400	Weak transcription	Colonic Mucosa	Colon
3	chr16:82085200-82093000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr16:82086200-82103800	Weak transcription	Gastric	stomach
5	chr16:82087800-82089600	Weak transcription	Stomach Mucosa	stomach
6	chr16:82088800-82089400	Strong transcription	Duodenum Mucosa	Duodenum
7	chr16:82088800-82089400	Enhancers	Lung	lung
8	chr16:82088800-82089600	Enhancers	Pancreas	Pancrea
9	chr16:82088800-82089800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr16:82088800-82090400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr16:82088800-82090600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr16:82088800-82090800	Enhancers	HMEC	breast
13	chr16:82089000-82089400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr16:82089000-82090200	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr16:82089000-82090600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr16:82089000-82090600	Enhancers	NHEK	skin
17	chr16:82089000-82090800	Enhancers	Fetal Intestine Small	intestine
18	chr16:82089000-82091400	Weak transcription	Placenta	Placenta
19	chr16:82089200-82089600	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr16:82089200-82089600	Flanking Active TSS	HepG2	liver
21	chr16:82089200-82089800	Flanking Active TSS	Liver	Liver
22	chr16:82089200-82090000	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr16:82089200-82090400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links