Variant report

Variant	rs4258604
Chromosome Location	chr16:82086928-82086929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16956282	1.00[EUR][1000 genomes]
rs16956326	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4587969	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58960032	0.83[AMR][1000 genomes]
rs7203108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73603089	1.00[EUR][1000 genomes]
rs74029368	1.00[EUR][1000 genomes]
rs74029369	1.00[EUR][1000 genomes]
rs74029370	1.00[EUR][1000 genomes]
rs74029371	1.00[EUR][1000 genomes]
rs8191100	1.00[EUR][1000 genomes]
rs8191102	1.00[EUR][1000 genomes]
rs8191163	1.00[EUR][1000 genomes]
rs8191181	1.00[EUR][1000 genomes]
rs8191187	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
4	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82076600-82094800	Enhancers	Fetal Intestine Large	intestine
2	chr16:82080000-82089200	Enhancers	Liver	Liver
3	chr16:82083800-82088800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr16:82084000-82088400	Weak transcription	Placenta	Placenta
5	chr16:82084000-82092400	Weak transcription	Colonic Mucosa	Colon
6	chr16:82084400-82088800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr16:82085000-82087200	Enhancers	Duodenum Mucosa	Duodenum
8	chr16:82085200-82093000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr16:82085600-82087600	Genic enhancers	HepG2	liver
10	chr16:82085800-82089200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr16:82086000-82087600	Enhancers	Fetal Intestine Small	intestine
12	chr16:82086200-82103800	Weak transcription	Gastric	stomach
13	chr16:82086400-82089000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr16:82086600-82087400	Weak transcription	Stomach Mucosa	stomach
15	chr16:82086800-82087200	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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