Variant report

Variant	rs16957086
Chromosome Location	chr15:43016962-43016963
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:43010972..43017152-chr15:43019499..43025146,7	MCF-7	breast:
2	chr15:43014717..43017348-chr15:43028002..43029875,2	MCF-7	breast:
3	chr15:43014319..43018768-chr15:43027782..43030873,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140326	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16957288	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv427959	chr15:42931181-43207353	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv457122	chr15:42948862-43062548	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv569238	chr15:42948862-43062548	Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv517553	chr15:42970899-43023482	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv977054	chr15:43015821-43171355	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42986000-43018400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:43000800-43018600	Weak transcription	A549	lung
3	chr15:43007200-43026800	Strong transcription	Fetal Stomach	stomach
4	chr15:43007800-43020800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:43008000-43027600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr15:43008200-43027600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:43008200-43027800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr15:43008400-43020000	Strong transcription	Fetal Muscle Trunk	muscle
9	chr15:43008400-43020400	Strong transcription	Brain Substantia Nigra	brain
10	chr15:43008600-43027400	Strong transcription	Fetal Brain Female	brain
11	chr15:43008800-43017200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr15:43008800-43018400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr15:43008800-43019800	Strong transcription	Brain Inferior Temporal Lobe	brain
14	chr15:43008800-43026600	Strong transcription	Skeletal Muscle Male	skeletal muscle
15	chr15:43008800-43027200	Strong transcription	Brain Germinal Matrix	brain
16	chr15:43008800-43027200	Strong transcription	Lung	lung
17	chr15:43008800-43027400	Strong transcription	Adipose Nuclei	Adipose
18	chr15:43008800-43027800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:43009000-43027400	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr15:43009000-43027600	Strong transcription	Duodenum Smooth Muscle	Duodenum
21	chr15:43009000-43027800	Strong transcription	Fetal Intestine Large	intestine
22	chr15:43009200-43027800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr15:43009400-43017400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr15:43009400-43018200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr15:43009600-43026600	Strong transcription	Spleen	Spleen
26	chr15:43009600-43027400	Strong transcription	Fetal Intestine Small	intestine
27	chr15:43009600-43027800	Strong transcription	Left Ventricle	heart
28	chr15:43009800-43018600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr15:43009800-43020800	Weak transcription	Stomach Mucosa	stomach
30	chr15:43010000-43017200	Strong transcription	Colon Smooth Muscle	Colon
31	chr15:43010000-43020200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr15:43010000-43027200	Strong transcription	Skeletal Muscle Female	skeletal muscle
33	chr15:43010000-43027400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr15:43010000-43027600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr15:43010000-43027600	Strong transcription	Brain Anterior Caudate	brain
36	chr15:43010000-43027600	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr15:43010200-43027400	Strong transcription	Primary T cells from cord blood	blood
38	chr15:43010200-43027600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr15:43010200-43027600	Strong transcription	Ovary	ovary
40	chr15:43010200-43027800	Strong transcription	Gastric	stomach
41	chr15:43010400-43026800	Strong transcription	Stomach Smooth Muscle	stomach
42	chr15:43010400-43026800	Strong transcription	Thymus	Thymus
43	chr15:43010400-43027600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr15:43010400-43027800	Strong transcription	Placenta	Placenta
45	chr15:43010800-43020600	Strong transcription	Fetal Lung	lung
46	chr15:43011000-43026600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr15:43011000-43026800	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr15:43011000-43027200	Strong transcription	Duodenum Mucosa	Duodenum
49	chr15:43011200-43020400	Strong transcription	Primary B cells from cord blood	blood
50	chr15:43011200-43027600	Strong transcription	Primary monocytes fromperipheralblood	blood

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