Variant report

Variant	rs16957898
Chromosome Location	chr16:82663438-82663439
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12925602	0.83[LWK][hapmap];0.82[YRI][hapmap]
rs16958020	1.00[MEX][hapmap]
rs2318180	1.00[MEX][hapmap]
rs8051643	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv1065896	chr16:82213517-82731994	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
6	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
7	nsv833305	chr16:82563888-82722084	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1059718	chr16:82564054-82810003	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1062787	chr16:82601618-82676019	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv542998	chr16:82601618-82676019	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82660200-82663800	Active TSS	Aorta	Aorta
2	chr16:82661600-82664000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr16:82661600-82664400	Flanking Active TSS	HUVEC	blood vessel
4	chr16:82661800-82664400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
5	chr16:82661800-82664400	Flanking Active TSS	NH-A	brain
6	chr16:82661800-82664400	Flanking Active TSS	Osteobl	bone
7	chr16:82662000-82664000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr16:82662000-82664200	Flanking Active TSS	HMEC	breast
9	chr16:82662000-82664600	Flanking Active TSS	NHEK	skin
10	chr16:82662200-82663600	Flanking Active TSS	HSMM	muscle
11	chr16:82662200-82666200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr16:82662400-82664000	Enhancers	Left Ventricle	heart
13	chr16:82662400-82664000	Enhancers	Right Atrium	heart
14	chr16:82662400-82666000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr16:82662600-82663800	Enhancers	Rectal Smooth Muscle	rectum
16	chr16:82662600-82664200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
17	chr16:82662600-82665800	Enhancers	Fetal Heart	heart
18	chr16:82662600-82666200	Enhancers	NHLF	lung
19	chr16:82662600-82669600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr16:82662800-82663600	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr16:82662800-82664000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr16:82662800-82664200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr16:82662800-82667600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr16:82662800-82667600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr16:82662800-82668800	Enhancers	Fetal Muscle Leg	muscle
26	chr16:82663000-82663600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
27	chr16:82663000-82663800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr16:82663000-82663800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
29	chr16:82663000-82663800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr16:82663000-82664000	Enhancers	Psoas Muscle	Psoas
31	chr16:82663000-82664400	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr16:82663000-82665000	Weak transcription	Fetal Muscle Trunk	muscle
33	chr16:82663000-82665200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr16:82663000-82665400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr16:82663200-82663600	Flanking Active TSS	Stomach Smooth Muscle	stomach
36	chr16:82663200-82663800	Enhancers	H1 Cell Line	embryonic stem cell
37	chr16:82663200-82663800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr16:82663200-82664000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
39	chr16:82663200-82664000	Enhancers	Fetal Stomach	stomach
40	chr16:82663200-82664200	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
41	chr16:82663200-82664400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr16:82663200-82665200	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr16:82663200-82675000	Enhancers	Right Ventricle	heart
44	chr16:82663400-82663600	Bivalent Enhancer	Duodenum Mucosa	Duodenum
45	chr16:82663400-82663800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
46	chr16:82663400-82663800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr16:82663400-82663800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr16:82663400-82663800	Enhancers	Hela-S3	cervix
49	chr16:82663400-82663800	Active TSS	HSMMtube	muscle
50	chr16:82663400-82663800	Enhancers	NHDF-Ad	bronchial

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