Variant report

Variant	rs16958020
Chromosome Location	chr16:82687998-82687999
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16957898	1.00[MEX][hapmap]
rs16957960	0.84[YRI][hapmap];0.82[AFR][1000 genomes]
rs2318180	1.00[MEX][hapmap]
rs56225555	0.82[AFR][1000 genomes]
rs60403193	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74030910	0.80[AFR][1000 genomes]
rs74030925	0.83[AFR][1000 genomes]
rs74030928	0.80[AFR][1000 genomes]
rs8048888	0.80[AFR][1000 genomes]
rs8051643	0.87[LWK][hapmap];1.00[MEX][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs8061983	0.84[YRI][hapmap]
rs8062745	0.96[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv1065896	chr16:82213517-82731994	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
6	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
7	nsv833305	chr16:82563888-82722084	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1059718	chr16:82564054-82810003	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
9	nsv907022	chr16:82680391-82718030	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv907023	chr16:82680391-82751932	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region miRNA	n/a	inside rSNPs	diseases
11	nsv1065303	chr16:82685793-82758280	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA miRNA	n/a	inside rSNPs	diseases
12	nsv542999	chr16:82685793-82758280	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA miRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82682800-82689400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr16:82683000-82690000	Enhancers	Psoas Muscle	Psoas
3	chr16:82683000-82694200	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr16:82683000-82694800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr16:82683200-82692200	Enhancers	Thymus	Thymus
6	chr16:82683200-82695200	Enhancers	Primary T cells fromperipheralblood	blood
7	chr16:82683400-82691800	Enhancers	Primary T cells from cord blood	blood
8	chr16:82683600-82690400	Enhancers	Fetal Thymus	thymus
9	chr16:82683600-82694200	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr16:82684000-82692400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr16:82684400-82689800	Flanking Active TSS	GM12878-XiMat	blood
12	chr16:82685000-82689200	Enhancers	Small Intestine	intestine
13	chr16:82685000-82690400	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr16:82685200-82688200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr16:82685200-82688200	Enhancers	Primary B cells from peripheral blood	blood
16	chr16:82685200-82689600	Enhancers	Fetal Intestine Large	intestine
17	chr16:82685200-82689800	Enhancers	Fetal Intestine Small	intestine
18	chr16:82685200-82689800	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr16:82685200-82690400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr16:82685200-82691800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr16:82685400-82688800	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr16:82685400-82689800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr16:82685400-82690400	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr16:82685600-82690000	Enhancers	Fetal Muscle Leg	muscle
25	chr16:82685800-82688400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr16:82685800-82689200	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr16:82685800-82690200	Enhancers	Right Ventricle	heart
28	chr16:82685800-82694400	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr16:82686000-82689400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr16:82686000-82689600	Enhancers	Duodenum Mucosa	Duodenum
31	chr16:82686000-82690000	Enhancers	Left Ventricle	heart
32	chr16:82686000-82695000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr16:82686600-82688600	Flanking Active TSS	NHEK	skin
34	chr16:82686600-82691000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr16:82686800-82688000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr16:82686800-82688200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr16:82686800-82688200	Enhancers	Fetal Heart	heart
38	chr16:82687000-82688000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr16:82687000-82688000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr16:82687000-82688000	Enhancers	Adipose Nuclei	Adipose
41	chr16:82687000-82688000	Enhancers	Aorta	Aorta
42	chr16:82687000-82688000	Flanking Active TSS	Osteobl	bone
43	chr16:82687000-82688200	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr16:82687000-82688200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr16:82687000-82688200	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr16:82687000-82688400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr16:82687000-82688600	Enhancers	Fetal Stomach	stomach
48	chr16:82687000-82689200	Enhancers	Placenta	Placenta
49	chr16:82687000-82689600	Enhancers	Lung	lung
50	chr16:82687200-82688000	Enhancers	H9 Cell Line	embryonic stem cell

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