Variant report

Variant	rs16958453
Chromosome Location	chr18:45336541-45336542
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:45332755..45334879-chr18:45335286..45338211,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1051066	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16958447	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16958460	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16958463	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16958475	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16958497	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16958498	0.85[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16958499	0.85[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16958520	0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16958543	0.85[YRI][hapmap];1.00[EUR][1000 genomes]
rs16958545	1.00[EUR][1000 genomes]
rs16958551	0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs16958554	1.00[EUR][1000 genomes]
rs16958557	1.00[EUR][1000 genomes]
rs16958568	1.00[EUR][1000 genomes]
rs16958574	1.00[EUR][1000 genomes]
rs16958577	0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs16958585	0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs16958599	0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs16958615	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs16958635	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs1970666	0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs7232994	1.00[EUR][1000 genomes]
rs8084846	1.00[EUR][1000 genomes]
rs948599	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3425854	chr18:45188942-45336590	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45326400-45342400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr18:45327400-45358400	Weak transcription	HSMMtube	muscle
3	chr18:45327600-45352600	Weak transcription	Fetal Brain Female	brain
4	chr18:45328600-45351600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr18:45329400-45342000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr18:45332200-45342200	Weak transcription	Primary T cells from cord blood	blood
7	chr18:45332200-45352400	Weak transcription	Adipose Nuclei	Adipose
8	chr18:45332600-45351800	Weak transcription	Fetal Muscle Leg	muscle
9	chr18:45332800-45351600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr18:45333000-45357200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr18:45333200-45345600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr18:45333800-45351600	Weak transcription	A549	lung
13	chr18:45334600-45349800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr18:45335400-45365600	Weak transcription	Gastric	stomach
15	chr18:45335600-45336800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr18:45335600-45343600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr18:45335800-45336600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr18:45335800-45336800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr18:45335800-45351600	Weak transcription	Fetal Thymus	thymus
20	chr18:45336000-45341000	Weak transcription	Ovary	ovary
21	chr18:45336400-45336600	Enhancers	Thymus	Thymus
22	chr18:45336400-45351600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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