Variant report

Variant	rs16958585
Chromosome Location	chr18:45409951-45409952
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1051066	1.00[EUR][1000 genomes]
rs16958447	1.00[EUR][1000 genomes]
rs16958453	1.00[EUR][1000 genomes]
rs16958460	1.00[EUR][1000 genomes]
rs16958463	1.00[EUR][1000 genomes]
rs16958475	1.00[EUR][1000 genomes]
rs16958497	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs16958498	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs16958499	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs16958520	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs16958543	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16958545	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16958551	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16958554	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16958557	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16958568	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16958574	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16958577	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16958599	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16958615	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16958635	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16958643	0.82[YRI][hapmap];0.88[AFR][1000 genomes]
rs17815568	0.82[YRI][hapmap];0.88[AFR][1000 genomes]
rs1970666	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7232994	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72914353	0.91[AFR][1000 genomes]
rs8084846	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs948599	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057028	chr18:45384301-45410482	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1064124	chr18:45387616-45410760	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1057072	chr18:45395377-45410041	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv960228	chr18:45401994-45411054	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45382200-45420400	Weak transcription	Right Ventricle	heart
2	chr18:45384200-45421200	Weak transcription	Gastric	stomach
3	chr18:45384200-45423000	Weak transcription	Lung	lung
4	chr18:45384400-45410200	Weak transcription	Aorta	Aorta
5	chr18:45384400-45419600	Weak transcription	K562	blood
6	chr18:45384400-45423000	Weak transcription	Spleen	Spleen
7	chr18:45384800-45418400	Weak transcription	Fetal Brain Male	brain
8	chr18:45385600-45420800	Weak transcription	Brain Germinal Matrix	brain
9	chr18:45386800-45420400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr18:45386800-45420600	Weak transcription	Esophagus	oesophagus
11	chr18:45389000-45410200	Weak transcription	Psoas Muscle	Psoas
12	chr18:45390000-45413600	Weak transcription	Fetal Heart	heart
13	chr18:45390400-45410000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr18:45390600-45410400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr18:45390600-45419600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr18:45391000-45418400	Weak transcription	HUVEC	blood vessel
17	chr18:45391200-45416400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr18:45394600-45414000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr18:45395400-45420800	Weak transcription	Fetal Brain Female	brain
20	chr18:45396000-45418800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr18:45396200-45413400	Weak transcription	Primary B cells from peripheral blood	blood
22	chr18:45397000-45430600	Weak transcription	Brain Angular Gyrus	brain
23	chr18:45398200-45420400	Weak transcription	Stomach Smooth Muscle	stomach
24	chr18:45398400-45414400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr18:45398600-45410200	Weak transcription	Colon Smooth Muscle	Colon
26	chr18:45398600-45410200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr18:45399200-45413400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr18:45399200-45420600	Weak transcription	Pancreas	Pancrea
29	chr18:45399600-45411600	Weak transcription	Fetal Intestine Small	intestine
30	chr18:45399600-45413600	Weak transcription	Fetal Muscle Trunk	muscle
31	chr18:45399600-45419000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr18:45400400-45410400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr18:45400400-45432200	Weak transcription	Ovary	ovary
34	chr18:45400600-45410600	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr18:45400600-45424600	Weak transcription	Stomach Mucosa	stomach
36	chr18:45401200-45410400	Weak transcription	Brain Substantia Nigra	brain
37	chr18:45401200-45426000	Weak transcription	Brain Cingulate Gyrus	brain
38	chr18:45401400-45420600	Weak transcription	Brain Anterior Caudate	brain
39	chr18:45401400-45424600	Weak transcription	Brain Hippocampus Middle	brain
40	chr18:45401600-45421400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr18:45401600-45423400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr18:45403000-45411200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr18:45403800-45422200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr18:45404800-45417800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr18:45404800-45418000	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr18:45405200-45423400	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr18:45405400-45411000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr18:45405800-45411000	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr18:45406000-45410800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr18:45406600-45410200	Strong transcription	Primary T helper cells PMA-I stimulated	--

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