Variant report

Variant	rs72914353
Chromosome Location	chr18:45467894-45467895
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16958543	0.91[AFR][1000 genomes]
rs16958545	0.91[AFR][1000 genomes]
rs16958551	0.91[AFR][1000 genomes]
rs16958554	0.97[AFR][1000 genomes]
rs16958557	0.97[AFR][1000 genomes]
rs16958568	0.85[AFR][1000 genomes]
rs16958574	0.97[AFR][1000 genomes]
rs16958577	0.97[AFR][1000 genomes]
rs16958585	0.91[AFR][1000 genomes]
rs16958599	0.97[AFR][1000 genomes]
rs16958615	0.91[AFR][1000 genomes]
rs16958635	0.97[AFR][1000 genomes]
rs16958643	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17815568	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1787177	0.84[EUR][1000 genomes]
rs1787182	1.00[ASN][1000 genomes]
rs1792673	0.87[EUR][1000 genomes]
rs1970666	0.97[AFR][1000 genomes]
rs7232994	0.85[AFR][1000 genomes]
rs948599	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909614	chr18:45419421-45478490	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv909615	chr18:45452321-45493026	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45459600-45471600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr18:45463800-45468400	Weak transcription	Hela-S3	cervix
3	chr18:45465200-45468200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr18:45465200-45468400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:45465800-45468600	Weak transcription	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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