Variant report

Variant	rs16958657
Chromosome Location	chr16:11875757-11875758
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:11853742..11856605-chr16:11874846..11876889,2	K562	blood:
2	chr16:11855105..11857144-chr16:11874671..11876346,2	K562	blood:
3	chr16:11872866..11878116-chr16:11891031..11894440,6	K562	blood:
4	chr16:11874839..11876842-chr16:11943852..11946760,2	K562	blood:
5	chr16:11874200..11876842-chr16:11943852..11945564,2	K562	blood:
6	chr16:11866791..11869589-chr16:11873428..11876350,2	K562	blood:
7	chr16:11835528..11837699-chr16:11874336..11876953,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122299	Chromatin interaction
ENSG00000171490	Chromatin interaction
ENSG00000262420	Chromatin interaction
ENSG00000263307	Chromatin interaction
ENSG00000153066	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10438540	1.00[JPT][hapmap]
rs1429077	0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs16958654	0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs16958664	0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs3972316	0.87[AFR][1000 genomes]
rs56718153	0.87[AFR][1000 genomes]
rs8191325	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037143	chr16:11454248-11913932	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv482288	chr16:11776491-11946429	Flanking Active TSS Strong transcription Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
3	nsv1043909	chr16:11839910-12007435	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv1042660	chr16:11846873-12110435	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:11837400-11877400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr16:11843200-11876200	Strong transcription	Dnd41	blood
3	chr16:11849400-11876200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr16:11854800-11877400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr16:11857200-11875800	Strong transcription	Liver	Liver
6	chr16:11857600-11875800	Weak transcription	Fetal Heart	heart
7	chr16:11863400-11876200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr16:11864000-11875800	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr16:11864000-11876200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr16:11867200-11877200	Weak transcription	Gastric	stomach
11	chr16:11867200-11890000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr16:11867600-11881000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr16:11868400-11889800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr16:11868800-11876200	Weak transcription	Spleen	Spleen
15	chr16:11869400-11890000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr16:11869600-11876200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr16:11869600-11876200	Weak transcription	Esophagus	oesophagus
18	chr16:11869800-11876000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr16:11869800-11877200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr16:11870200-11875800	Weak transcription	Brain Germinal Matrix	brain
21	chr16:11870200-11884800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr16:11870800-11875800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr16:11870800-11876000	Weak transcription	Colonic Mucosa	Colon
24	chr16:11871200-11889800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr16:11871400-11875800	Weak transcription	Stomach Mucosa	stomach
26	chr16:11871400-11875800	Weak transcription	NHLF	lung
27	chr16:11871400-11876000	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr16:11871400-11877000	Weak transcription	A549	lung
29	chr16:11871400-11890000	Weak transcription	Ovary	ovary
30	chr16:11871600-11875800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr16:11871600-11889600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr16:11872400-11875800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr16:11872400-11876200	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr16:11872800-11875800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr16:11872800-11876200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr16:11872800-11877200	Weak transcription	Fetal Intestine Small	intestine
37	chr16:11873000-11876000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr16:11873400-11875800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr16:11873600-11876800	Weak transcription	Primary B cells from cord blood	blood
40	chr16:11873600-11877800	Weak transcription	Hela-S3	cervix
41	chr16:11874000-11881800	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr16:11874000-11889800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr16:11874200-11888800	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr16:11874400-11875800	Enhancers	HSMMtube	muscle
45	chr16:11874400-11876200	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr16:11874400-11876200	Enhancers	Brain Anterior Caudate	brain
47	chr16:11874400-11877000	Enhancers	Fetal Brain Male	brain
48	chr16:11874400-11877200	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr16:11874400-11877600	Enhancers	Brain Cingulate Gyrus	brain
50	chr16:11874400-11878600	Enhancers	Fetal Stomach	stomach

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