Variant report

Variant	rs16958905
Chromosome Location	chr16:82977805-82977806
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82974835..82978112-chr16:82980559..82984305,4	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10492863	1.00[CHB][hapmap]
rs11150504	1.00[CHB][hapmap]
rs11649214	1.00[CHB][hapmap]
rs11861198	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16958779	1.00[CHB][hapmap]
rs16958782	1.00[CHB][hapmap]
rs16958926	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16958935	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17673125	1.00[CHB][hapmap]
rs17740895	1.00[CHB][hapmap]
rs17740967	1.00[CHB][hapmap]
rs17743387	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17743405	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4783289	1.00[CHB][hapmap]
rs56201418	0.84[AFR][1000 genomes]
rs7187447	1.00[CHB][hapmap]
rs7197674	1.00[CHB][hapmap]
rs7499040	1.00[JPT][hapmap]
rs8050580	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1063617	chr16:82786803-83229529	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv907029	chr16:82951179-83044665	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv907030	chr16:82959437-83044665	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1055454	chr16:82964787-82984576	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82934000-83003400	Weak transcription	NHEK	skin
2	chr16:82934600-82989600	Weak transcription	HSMMtube	muscle
3	chr16:82970600-82978200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr16:82970800-83021000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr16:82971400-82979000	Weak transcription	NH-A	brain
6	chr16:82971400-82979400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr16:82971400-83009000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr16:82972800-82994600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr16:82974400-82980600	Weak transcription	HSMM	muscle
10	chr16:82976600-83013800	Weak transcription	Aorta	Aorta
11	chr16:82977000-82978000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr16:82977200-82978000	Weak transcription	Brain Germinal Matrix	brain
13	chr16:82977200-82978000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr16:82977200-82979200	Enhancers	HUVEC	blood vessel
15	chr16:82977400-82978400	Enhancers	Right Ventricle	heart
16	chr16:82977400-82979000	Enhancers	Psoas Muscle	Psoas
17	chr16:82977400-82979200	Enhancers	Left Ventricle	heart
18	chr16:82977400-82980400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr16:82977600-82978000	Enhancers	Adipose Nuclei	Adipose
20	chr16:82977600-82978200	Enhancers	Right Atrium	heart
21	chr16:82977600-82979000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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