Variant report

Variant	rs56201418
Chromosome Location	chr16:82969567-82969568
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10492866	0.85[EUR][1000 genomes]
rs11860770	0.94[ASN][1000 genomes]
rs11863181	0.90[ASN][1000 genomes]
rs11864595	0.94[ASN][1000 genomes]
rs11865978	0.90[ASN][1000 genomes]
rs13332255	0.93[ASN][1000 genomes]
rs16958905	0.84[AFR][1000 genomes]
rs34694300	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6565085	0.82[EUR][1000 genomes]
rs6565087	0.85[EUR][1000 genomes]
rs7185364	0.87[ASN][1000 genomes]
rs7191112	0.94[ASN][1000 genomes]
rs721630	0.81[ASN][1000 genomes]
rs721631	0.94[ASN][1000 genomes]
rs8050580	0.85[AFR][1000 genomes]
rs9928761	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1063617	chr16:82786803-83229529	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv907028	chr16:82940611-82974628	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv907029	chr16:82951179-83044665	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv907030	chr16:82959437-83044665	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1055454	chr16:82964787-82984576	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82934000-83003400	Weak transcription	NHEK	skin
2	chr16:82934600-82989600	Weak transcription	HSMMtube	muscle
3	chr16:82959200-82977400	Weak transcription	Left Ventricle	heart
4	chr16:82959200-82977600	Weak transcription	Right Atrium	heart
5	chr16:82959400-82977400	Weak transcription	Right Ventricle	heart
6	chr16:82962000-82970200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr16:82962600-82970200	Weak transcription	HSMM	muscle
8	chr16:82967200-82970000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr16:82967400-82972400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr16:82967800-82969600	Weak transcription	HUVEC	blood vessel
11	chr16:82968000-82970000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr16:82968000-82970200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr16:82968000-82970200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr16:82968000-82970400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr16:82968000-82971000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr16:82968800-82971200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr16:82969000-82972000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr16:82969200-82969600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr16:82969200-82970600	Enhancers	Primary T cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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