Variant report

Variant	rs11865978
Chromosome Location	chr16:82972146-82972147
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10871438	0.81[ASN][1000 genomes]
rs10871439	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10871440	0.95[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10871441	0.95[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11150527	0.80[JPT][hapmap]
rs11860770	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11863181	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11864595	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11866755	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs12324975	0.80[JPT][hapmap]
rs13332255	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17682248	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs1862677	0.95[CEU][hapmap]
rs1862679	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs1862680	0.95[CEU][hapmap]
rs1991022	0.95[CEU][hapmap]
rs1991023	0.95[CEU][hapmap]
rs2216737	0.95[CEU][hapmap]
rs28726147	0.89[EUR][1000 genomes]
rs34111356	0.96[EUR][1000 genomes]
rs34694300	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34863170	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56201418	0.90[ASN][1000 genomes]
rs6565086	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6565088	0.95[CEU][hapmap]
rs6565089	1.00[CEU][hapmap]
rs7185364	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7189754	0.95[CEU][hapmap]
rs7190176	0.95[CEU][hapmap]
rs7191112	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7201133	0.95[CEU][hapmap]
rs721630	0.89[ASN][1000 genomes]
rs721631	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs72790147	0.85[ASN][1000 genomes]
rs918655	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs918656	0.95[CEU][hapmap]
rs9319581	0.95[CEU][hapmap]
rs9926368	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs9928761	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1063617	chr16:82786803-83229529	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv907028	chr16:82940611-82974628	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv907029	chr16:82951179-83044665	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv907030	chr16:82959437-83044665	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1055454	chr16:82964787-82984576	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82934000-83003400	Weak transcription	NHEK	skin
2	chr16:82934600-82989600	Weak transcription	HSMMtube	muscle
3	chr16:82959200-82977400	Weak transcription	Left Ventricle	heart
4	chr16:82959200-82977600	Weak transcription	Right Atrium	heart
5	chr16:82959400-82977400	Weak transcription	Right Ventricle	heart
6	chr16:82967400-82972400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr16:82969600-82972800	Enhancers	HUVEC	blood vessel
8	chr16:82970200-82972600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr16:82970200-82972600	Enhancers	HMEC	breast
10	chr16:82970600-82978200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr16:82970800-82974000	Weak transcription	HSMM	muscle
12	chr16:82970800-83021000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr16:82971200-82972200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr16:82971200-82977400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr16:82971400-82979000	Weak transcription	NH-A	brain
16	chr16:82971400-82979400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr16:82971400-83009000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr16:82971600-82972600	Enhancers	Fetal Muscle Leg	muscle
19	chr16:82971800-82972600	Enhancers	Brain Germinal Matrix	brain
20	chr16:82972000-82972800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr16:82972000-82972800	Enhancers	Fetal Muscle Trunk	muscle
22	chr16:82972000-82973000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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