Variant report

Variant	rs918656
Chromosome Location	chr16:82974849-82974850
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82974835..82978112-chr16:82980559..82984305,4	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10492866	0.85[JPT][hapmap]
rs10871439	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs10871440	0.95[CEU][hapmap]
rs10871441	0.95[CEU][hapmap]
rs11150525	0.85[JPT][hapmap]
rs11860770	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11863181	0.95[CEU][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes]
rs11864595	1.00[CEU][hapmap];0.97[GIH][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs11865978	0.95[CEU][hapmap]
rs11866755	0.95[CEU][hapmap];0.92[JPT][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap];0.81[ASN][1000 genomes]
rs13332255	1.00[CEU][hapmap];0.97[GIH][hapmap];0.86[TSI][hapmap];0.94[EUR][1000 genomes]
rs1862677	0.95[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1862678	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1862679	0.95[CEU][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1862680	0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1991022	0.95[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1991023	0.95[CEU][hapmap];0.83[CHB][hapmap];0.92[CHD][hapmap];0.85[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.83[TSI][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2216737	0.95[CEU][hapmap];0.85[JPT][hapmap]
rs28726147	0.82[ASN][1000 genomes]
rs34111356	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34248819	0.89[ASN][1000 genomes]
rs6565088	0.95[CEU][hapmap]
rs6565089	0.95[CEU][hapmap];0.87[MEX][hapmap]
rs66956700	0.82[ASN][1000 genomes]
rs7185364	0.83[EUR][1000 genomes]
rs7189754	0.94[ASW][hapmap];1.00[CEU][hapmap];0.92[CHD][hapmap];0.89[GIH][hapmap];0.92[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7190176	0.84[ASW][hapmap];0.95[CEU][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];0.92[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.86[TSI][hapmap]
rs7191112	0.81[EUR][1000 genomes]
rs7191791	0.83[CHD][hapmap];0.85[JPT][hapmap]
rs7200922	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7201133	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs721631	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[MKK][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs918655	0.84[CHD][hapmap];0.81[GIH][hapmap];0.95[LWK][hapmap];0.89[MKK][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes]
rs9319581	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs9926368	0.95[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1063617	chr16:82786803-83229529	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv907029	chr16:82951179-83044665	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv907030	chr16:82959437-83044665	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1055454	chr16:82964787-82984576	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs918656	OSGIN1	cis	cerebellum	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82934000-83003400	Weak transcription	NHEK	skin
2	chr16:82934600-82989600	Weak transcription	HSMMtube	muscle
3	chr16:82959200-82977400	Weak transcription	Left Ventricle	heart
4	chr16:82959200-82977600	Weak transcription	Right Atrium	heart
5	chr16:82959400-82977400	Weak transcription	Right Ventricle	heart
6	chr16:82970600-82978200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr16:82970800-83021000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr16:82971200-82977400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr16:82971400-82979000	Weak transcription	NH-A	brain
10	chr16:82971400-82979400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr16:82971400-83009000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr16:82972400-82975000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr16:82972600-82976400	Weak transcription	HMEC	breast
14	chr16:82972800-82977200	Weak transcription	HUVEC	blood vessel
15	chr16:82972800-82977400	Weak transcription	Psoas Muscle	Psoas
16	chr16:82972800-82994600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr16:82974000-82975000	Weak transcription	Brain Germinal Matrix	brain
18	chr16:82974400-82976200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr16:82974400-82980600	Weak transcription	HSMM	muscle
20	chr16:82974600-82976800	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links