Variant report

Variant	rs6565089
Chromosome Location	chr16:82983033-82983034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82974835..82978112-chr16:82980559..82984305,4	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10492865	0.86[CHB][hapmap]
rs10492866	1.00[CHB][hapmap];0.96[CHD][hapmap];0.92[JPT][hapmap];0.82[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10492867	0.93[CHB][hapmap]
rs10871438	0.87[EUR][1000 genomes]
rs10871439	0.82[EUR][1000 genomes]
rs10871440	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10871441	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs11150525	0.81[CEU][hapmap]
rs11150527	0.83[CHD][hapmap];0.82[JPT][hapmap]
rs11860770	0.95[CEU][hapmap]
rs11863181	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs11864595	0.95[CEU][hapmap]
rs11865978	1.00[CEU][hapmap]
rs11866755	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12324975	0.87[CHD][hapmap];0.82[JPT][hapmap]
rs12447446	0.86[CHB][hapmap]
rs13332255	0.95[CEU][hapmap]
rs16958917	0.93[CHB][hapmap];0.81[ASN][1000 genomes]
rs1862677	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1862678	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1862679	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1862680	1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1991022	1.00[CEU][hapmap];0.87[CHB][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1991023	1.00[CEU][hapmap];0.87[CHB][hapmap];0.85[GIH][hapmap];0.92[JPT][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2216737	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.92[JPT][hapmap];0.87[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28726147	0.94[ASN][1000 genomes]
rs34111356	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34248819	0.89[ASN][1000 genomes]
rs34863170	0.84[EUR][1000 genomes]
rs34897530	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6565085	0.92[EUR][1000 genomes]
rs6565086	0.89[EUR][1000 genomes]
rs6565087	1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6565088	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6565091	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66956700	0.87[ASN][1000 genomes]
rs7189754	0.95[CEU][hapmap];0.93[CHB][hapmap];0.84[CHD][hapmap];0.85[GIH][hapmap];0.84[JPT][hapmap];0.87[MEX][hapmap];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7190176	1.00[CEU][hapmap];0.93[CHB][hapmap];0.84[CHD][hapmap];0.91[GIH][hapmap];0.84[JPT][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap]
rs7191791	0.80[CHB][hapmap];0.91[CHD][hapmap];0.82[MEX][hapmap];0.85[ASN][1000 genomes]
rs7201133	0.95[CEU][hapmap];0.87[CHB][hapmap];0.83[ASN][1000 genomes]
rs721631	0.95[CEU][hapmap]
rs72790160	0.83[ASN][1000 genomes]
rs72790161	0.81[ASN][1000 genomes]
rs918656	0.95[CEU][hapmap];0.87[MEX][hapmap]
rs9319581	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9926368	0.90[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1063617	chr16:82786803-83229529	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv907029	chr16:82951179-83044665	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv907030	chr16:82959437-83044665	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1055454	chr16:82964787-82984576	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6565089	OSGIN1	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82934000-83003400	Weak transcription	NHEK	skin
2	chr16:82934600-82989600	Weak transcription	HSMMtube	muscle
3	chr16:82970800-83021000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr16:82971400-83009000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr16:82972800-82994600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr16:82976600-83013800	Weak transcription	Aorta	Aorta
7	chr16:82978200-82985200	Weak transcription	Brain Germinal Matrix	brain
8	chr16:82978200-82989600	Weak transcription	Right Atrium	heart
9	chr16:82979200-83004600	Weak transcription	Left Ventricle	heart
10	chr16:82979400-82984600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr16:82980800-82989000	Weak transcription	HSMM	muscle
12	chr16:82982600-82983200	Enhancers	Stomach Smooth Muscle	stomach
13	chr16:82983000-82983400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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