Variant report

Variant	rs6565085
Chromosome Location	chr16:82967558-82967559
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10492866	0.82[EUR][1000 genomes]
rs10871438	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10871439	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10871440	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10871441	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11863181	0.87[AMR][1000 genomes]
rs11866755	0.85[EUR][1000 genomes]
rs1862677	0.84[EUR][1000 genomes]
rs1862678	0.84[EUR][1000 genomes]
rs1862679	0.87[EUR][1000 genomes]
rs1862680	0.84[EUR][1000 genomes]
rs1991022	0.81[EUR][1000 genomes]
rs1991023	0.84[EUR][1000 genomes]
rs2216737	0.90[EUR][1000 genomes]
rs34863170	0.81[EUR][1000 genomes]
rs34897530	0.85[EUR][1000 genomes]
rs56201418	0.82[EUR][1000 genomes]
rs6565086	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6565087	0.82[EUR][1000 genomes]
rs6565088	0.89[EUR][1000 genomes]
rs6565089	0.92[EUR][1000 genomes]
rs6565091	0.91[EUR][1000 genomes]
rs721631	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1063617	chr16:82786803-83229529	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv907028	chr16:82940611-82974628	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv907029	chr16:82951179-83044665	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv907030	chr16:82959437-83044665	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1055454	chr16:82964787-82984576	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3345076	chr16:82965187-82968062	Weak transcription Enhancers ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases
10	esv3446492	chr16:82965577-82967980	Weak transcription Enhancers ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82934000-83003400	Weak transcription	NHEK	skin
2	chr16:82934600-82989600	Weak transcription	HSMMtube	muscle
3	chr16:82959200-82977400	Weak transcription	Left Ventricle	heart
4	chr16:82959200-82977600	Weak transcription	Right Atrium	heart
5	chr16:82959400-82977400	Weak transcription	Right Ventricle	heart
6	chr16:82962000-82970200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr16:82962600-82970200	Weak transcription	HSMM	muscle
8	chr16:82966000-82968400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr16:82967000-82968000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr16:82967200-82969000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
11	chr16:82967200-82970000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr16:82967400-82967600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
13	chr16:82967400-82968000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr16:82967400-82968000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr16:82967400-82972400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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