Variant report

Variant	rs10492866
Chromosome Location	chr16:82982465-82982466
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82974835..82978112-chr16:82980559..82984305,4	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10492865	0.86[CHB][hapmap]
rs10492867	0.93[CHB][hapmap]
rs11150525	0.85[JPT][hapmap]
rs11150527	0.89[CEU][hapmap];0.87[CHD][hapmap]
rs11150528	0.88[CEU][hapmap]
rs11866755	1.00[CHB][hapmap];0.96[CHD][hapmap];0.92[JPT][hapmap];0.96[ASN][1000 genomes]
rs12324975	0.89[CEU][hapmap];0.91[CHD][hapmap]
rs12447446	0.86[CHB][hapmap]
rs16958917	0.93[CHB][hapmap];0.82[ASN][1000 genomes]
rs17682248	0.88[CEU][hapmap]
rs1862677	0.87[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs1862678	0.87[ASN][1000 genomes]
rs1862679	0.93[CHB][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1862680	0.87[CHB][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs1991022	0.87[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs1991023	0.87[CHB][hapmap];0.80[CHD][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs2216737	1.00[CHB][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28726147	0.93[ASN][1000 genomes]
rs34111356	0.89[ASN][1000 genomes]
rs34248819	0.88[ASN][1000 genomes]
rs34897530	0.82[ASN][1000 genomes]
rs56201418	0.85[EUR][1000 genomes]
rs6565085	0.82[EUR][1000 genomes]
rs6565087	0.94[CEU][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6565088	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6565089	1.00[CHB][hapmap];0.96[CHD][hapmap];0.92[JPT][hapmap];0.82[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6565091	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66956700	0.86[ASN][1000 genomes]
rs7189754	0.93[CHB][hapmap];0.88[CHD][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs7190176	0.93[CHB][hapmap];0.88[CHD][hapmap];0.92[JPT][hapmap]
rs7191791	0.80[CHB][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs7201133	0.87[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs72790160	0.84[ASN][1000 genomes]
rs72790161	0.82[ASN][1000 genomes]
rs918656	0.85[JPT][hapmap]
rs9319581	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9926368	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1063617	chr16:82786803-83229529	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv907029	chr16:82951179-83044665	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv907030	chr16:82959437-83044665	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1055454	chr16:82964787-82984576	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82934000-83003400	Weak transcription	NHEK	skin
2	chr16:82934600-82989600	Weak transcription	HSMMtube	muscle
3	chr16:82970800-83021000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr16:82971400-83009000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr16:82972800-82994600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr16:82976600-83013800	Weak transcription	Aorta	Aorta
7	chr16:82978200-82985200	Weak transcription	Brain Germinal Matrix	brain
8	chr16:82978200-82989600	Weak transcription	Right Atrium	heart
9	chr16:82979200-83004600	Weak transcription	Left Ventricle	heart
10	chr16:82979400-82984600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr16:82980400-82982800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr16:82980800-82989000	Weak transcription	HSMM	muscle
13	chr16:82982200-82983000	Enhancers	Colon Smooth Muscle	Colon
14	chr16:82982200-82983000	Enhancers	Rectal Smooth Muscle	rectum

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