Variant report

Variant	rs16960407
Chromosome Location	chr18:45263983-45263984
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1466904	1.00[EUR][1000 genomes]
rs1466906	1.00[EUR][1000 genomes]
rs16956277	1.00[EUR][1000 genomes]
rs16960403	0.85[ASN][1000 genomes]
rs16960405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3911881	1.00[EUR][1000 genomes]
rs3913591	0.85[ASN][1000 genomes]
rs58119565	1.00[EUR][1000 genomes]
rs60081995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60483057	0.92[ASN][1000 genomes]
rs7229826	0.85[ASN][1000 genomes]
rs7242791	0.92[ASN][1000 genomes]
rs7243611	0.92[ASN][1000 genomes]
rs73953301	1.00[ASN][1000 genomes]
rs8083742	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3425854	chr18:45188942-45336590	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv576823	chr18:45207893-45264035	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45260200-45264600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr18:45261800-45264200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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